Query= MSMg01no421_j07.b1 MSMg01no421_j07.b1 CHROMAT_FILE:
MSMg01no421_j07.b1 PHD_FILE: MSMg01no421_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:48 2005
(521 letters)
>mm_chr2_81164449_81165369
Length = 921
Score = 888 bits (459), Expect = 0.0
Identities = 501/519 (96%), Gaps = 8/519 (1%)
Strand = Plus / Minus
Query: 5 gaattcctggtgataatttaaatgaaacctgactatctctatcatacacacacacacaca 64
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 800 gaattccgggtgataatttaaatgaaacctgactatctctatcat------acacacact 747
Query: 65 cacacacacacacacacaca--cacgtatgtatatgagactatcaatattatttttggat 122
| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 746 ctcacacacacacacacacatgcatgtatgtatatgagactatcaatattatttttggat 687
Query: 123 tgatatgtatgtatatgtatacaaacacacaaacacatatatggagcagtattaatcagg 182
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 686 tgatatgtatgtatatgtatgcaaacacacaaacacatatatggagtagtattaatcagg 627
Query: 183 gagtaatttcagtttatacacacaagaccacaaatcttcaattacagtggttgtctttgt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gagtaatttcagtttatacacacaagaccacaaatcttcaattacagtggttgtctttgt 567
Query: 243 tctaaaacaatatcaataaaatgatctcatctcagcctgtgttctcctacattatagaat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tctaaaacaatatcaataaaatgatctcatctcagcctgtgttctcctacattatagaat 507
Query: 303 aataaaagccaattaccgtccaagttatcatgctgtaatctgtagaaaaaagcacatagc 362
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 506 aataaaagccaattaccatccaagttatcatgctgtaatctgtagaaaacagcacatagc 447
Query: 363 tgttattttcttcatggtctctaatatgtagaagagaataaaagccaaagatggctgtct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgttattttcttcatggtctctaatatgtagaagagaataaaagccaaagatggctgtct 387
Query: 423 ggtggtgagaacacggaagactgctgccctgggcttttaaggaacacggaatcttatttt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggtggtgagaacacggaagactgctgccctgggcttttaaggaacacggaatcttatttt 327
Query: 483 atgtggaagctaaattgtggagaacaagcttttatcaag 521
|||| ||||||||||||||||||||||| ||||||||||
Sbjct: 326 atgtagaagctaaattgtggagaacaagattttatcaag 288
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_j07.g1 MSMg01no421_j07.g1 CHROMAT_FILE:
MSMg01no421_j07.g1 PHD_FILE: MSMg01no421_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:48 2005
(479 letters)
>mm_chr2_81090728_81091607
Length = 880
Score = 864 bits (447), Expect = 0.0
Identities = 472/481 (98%), Gaps = 3/481 (0%)
Strand = Plus / Plus
Query: 1 tcagaattattatgatctgaccgttgacatgtaacctttttgagcagatgttataacttc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tcagaattattatgatctgaccgttgacatgtaacctttttgagcagatgttgtaacttc 260
Query: 61 cttttgaaaggagaagctttggggattagcaccactttgtttacaggtacttttttgaat 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 cttttgaaaggagaagctttggggattagcaccactttgtttac-ggtacttttttgaat 319
Query: 121 agaggtatttctccacgtgatcatttagctgcttcacgagtgctttttggatatttattt 180
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct: 320 agaggtatttctccacgtgatcattcagctgtttcacgagtgctttttgtatatttattt 379
Query: 181 acttgagcaagcagcattctaaacattactcatgccttgaaaaaatttatagtttttata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acttgagcaagcagcattctaaacattactcatgccttgaaaaaatttatagtttttata 439
Query: 241 attagtatgagagactaacatatgcattctttaaggacttttagtgttcaaaaaaatctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attagtatgagagactaacatatgcattctttaaggacttttagtgttcaaaaaaatctt 499
Query: 301 attttgcagaaaatgtatcagttcaccagactgaattaaaaaaa--tgcactcaattatt 358
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 attttgcagaaaatgtatcagttcaccagactgaattaaaaaaaaatgcactcaattatt 559
Query: 359 ttcttgtataggatgttattgagtcatgaagaaagtgacaagttagtacatgactttaag 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttcttgtataggacgttattgagtcatgaagaaagtgacaagttagtacatgactttaag 619
Query: 419 caacaaagtttacatatgcatgcttaatattgtttgtacatattttatgacttttttgag 478
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 620 caacaaagtttacatatgcatgcttaatattgtttgtacatattttatgagttttttgag 679
Query: 479 a 479
|
Sbjct: 680 a 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 880
Length adjustment: 10
Effective length of query: 469
Effective length of database: 870
Effective search space: 408030
Effective search space used: 408030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
