BAC Information

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BAC

Clone NameMSMg01-421K21
Chromosome2 (Build37)
Map Location 168,241,771 - 168,242,196
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1
Downstream geneLOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421K21.T7 (MSMg01no421_k21.b1)MSMg01-421K21.TJ (MSMg01no421_k21.g1)
ACCAG516249AG516250
length774787
length of high quality
(start - end)		504 (76 - 579)443 (80 - 522)
definitionCHROMAT_FILE: MSMg01no421_k21.b1 PHD_FILE: MSMg01no421_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:56 2005CHROMAT_FILE: MSMg01no421_k21.g1 PHD_FILE: MSMg01no421_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGC
GGAATTCCTTGCTGCTTGCCGTTCAATGTCACGGTTAAGGAGGCTGTTCC
TGGGCAGGGGAAATGTAAAATTCTCGCCTTGAGCTGAGAGGAGCCAGAGT
TCAATCTACAGAACCCATACTTACAACGGGAGCTCAGTATGTTGTGCACA
CCGTCATGCCAGTACTGGGCAAGCAGAGGCTGAGTGAGAGGTTGAGGCAG
GTAGAGGCAGGGGCAGAGGAAGGCCGGGGGAAGGGGCAGGGGCAGTCAGA
AGATCAGGCAGAGAGGTGGATCTCGCTGGATGGCCAGCCTAGCTGATCAA
CCAGTTCTAGGTCAATGAGAGACTTCCAGGCCTTAAAAAAACAAAATCGC
GGTAGATAATGCCTGAAGAATGAGATTCAAGGTTGTTCTTAGTCTCCACA
GCACACGCATACCTGCACACTCACAAACATGTTCAAAGAGAAAGGGGGAG
GTCTATCTGGAGCTATGACTCAGTTGATACACAGCTCGTCTAGGATGCAC
AGAGTCCCGGGTTCCATCCATCCACATTAAACCGAACGTGGTGCACACCT
ACTACCTCAGCACCGGGAGGTAGAGGTCAGAGGATCAGAAACTCAAACTT
ACTCTTGGAGACACAGTGAGGAACCTGTGTTCTCCTAAAGTAATGGATGG
TAGGTAAGTAATTCACACATCCCCTTCTTATATTATTTATTTTCGCATAT
ACCCTACTACCTTCTCACCTCCCA

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGAACTCATTAATTCATCT
AAACAGCATTACCTCATGAAAGTTTATCTTCAGGTTGATCTGCAGGAAAT
TTGCCCAACAGAGTGGGGAAATCACCCAGGAAGCGATCACAGCAGACTAT
AGTCAGCCCACTCACACCATGCCAGGCATATGAGGAAGACAGCAACGACA
AAGGTGAGAAGGCACAGCAGCCACACTGGGACAGTGGGAATCAGAAGAGG
ACATCGAATTCCCTGGAGCTGGAGTGTTACTGATTGTTGTGAGAGAGTGC
TTTCAACAGCCTAGCTATCTCTCCAGGCCCCTGAAGGGTTTATTTTGGCT
GACAGTTCAAAGGAGTGGTGATGGGCAAGGCAGTAGTATGAGACATCTGG
TTGCATTGCATGTGCTGTCAGGAAGCTGAGAGCTGATACAAGGTGGGGCT
GGAGTGTAAGACCCAGGGCTGGGGTGCTGAGTCAGCAGCCAAGAGCACTA
CCGCAATCTGTAACTCCCGGTCCTGGAGTTGCAACACCTTCTTCTGGGCT
CTGAGGGCACCACGACATGCTTGGATAACCACAGTTGACACTTATTTTAA
TAATGGGCCATATATACATAGTTGCCCTTCTGCCCACCAAGGGGCTCATT
GTTCATTTCTCTATTGGTGAAAAAGTTTACCCACTTACCCCCGGGGGCCC
TATTATATCTCTGGGGATATCTTGCGACAAAATGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_k21.b1 MSMg01no421_k21.b1 CHROMAT_FILE:
MSMg01no421_k21.b1 PHD_FILE: MSMg01no421_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:56 2005
         (504 letters)



>mm_chr2_168241771_168242670
          Length = 900

 Score =  723 bits (374), Expect = 0.0
 Identities = 414/430 (96%), Gaps = 7/430 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtcacggttaaggaggctgttcctgggcaggggaaatgtaaaattctcgccttgagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atgtcacggttaaggaggctgttcctgggcaggggaaatgtaaaattctcgccttgagct 367

                                                                       
Query: 61  gagaggagccagagttcaatctacagaacccatacttacaacgggagctcagtatgttgt 120
           ||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 366 gaggggagccagagttcaatctatagaacccatgcttacaacgggagctcagtatgttgt 307

                                                                       
Query: 121 gcacaccgtcatgccagtactgggcaagcagaggctgagtgagaggttgaggcaggtaga 180
           ||||||||||||| |||||||||||||||||||||    |||||||||||||||||||||
Sbjct: 306 gcacaccgtcatgtcagtactgggcaagcagaggc----tgagaggttgaggcaggtaga 251

                                                                       
Query: 181 ggcaggggcagaggaaggccgggggaaggggcaggggcagtcagaagatcaggc--agag 238
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||
Sbjct: 250 ggcaggggcagaggaaggccgggggaaggggcagggacagtcagaagatcaggcagagag 191

                                                                       
Query: 239 aggtggatctcgctggatggccagcctagctg-atcaaccagttctaggtcaatgagaga 297
           |||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||
Sbjct: 190 aggtggatctcgctggatggccagcctagcagaatcagccagttctaggtcaatgagaga 131

                                                                       
Query: 298 cttccaggccttaaaaaaacaaaatcgcggtagataatgcctgaagaatgagattcaagg 357
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 cttccaggccttaaaaaaccaaaatcgcggtagataatgcctgaagaatgagattcaagg 71

                                                                       
Query: 358 ttgttcttagtctccacagcacacgcatacctgcacactcacaaacatgttcaaagagaa 417
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 70  ttgttcttagtctccacagcacacacatacctgcacactcacaaacatgttcaaagagaa 11

                     
Query: 418 agggggaggt 427
           ||||||||||
Sbjct: 10  agggggaggt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 900
Length adjustment: 10
Effective length of query: 494
Effective length of database: 890
Effective search space:   439660
Effective search space used:   439660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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