Query= MSMg01no422_g15.b1 MSMg01no422_g15.b1 CHROMAT_FILE:
MSMg01no422_g15.b1 PHD_FILE: MSMg01no422_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:51 2005
(590 letters)
>mm_chr2_7414650_7415639
Length = 990
Score = 1013 bits (524), Expect = 0.0
Identities = 572/590 (96%), Gaps = 7/590 (1%)
Strand = Plus / Plus
Query: 1 tgctggcctcgaactcagaaatccgcctacctctgcctctcaagtgctgggattaaaggc 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctggcctcgaactcagaaatttgcctacctctgcctctcaagtgctgggattaaaggc 260
Query: 61 atatgtcactactgcccagttctctgacctattttaaggccacaattgaaacaaaagatt 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatgtcaccactgcccagttctctgacctattttaaggccacaattgaaacaaaagatt 320
Query: 121 ttatacctactggaaagcagacaatcagattcatgcccacgaggccccttagtgtagaga 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ttatacctactggaaagcagacaatcagattcatgcccatgaggccccttagtgtagaga 380
Query: 181 gggagggaagcccttctgtgaacaggcacagccatgttcaggaccagtggttcagccttg 240
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 gggagtgaagcccttctgtgaacaggcacagtcatgttcaggaccagtggttcagccttg 440
Query: 241 ttgcagtggcaaattcttccccaggtgaagctcagtgggatagcaaagccttgggctgct 300
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcagtggcaaacccttccccaggtgaagctcagtgggatagcaaagccttgggctgct 500
Query: 301 ccagtggtgacagtgtatacagaaaatgcccactgcagctttctcccactgcccaagact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagtggtgacagtgtatacagaaaatgcccactgcagctttctcccactgcccaagact 560
Query: 361 gcctctctccagaggctgctcctaccaagactagctaaacctgtttgcttgttgagctat 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 gcctctctccagaggctgctcctaccaagactagctaaacctgttttcttgttgagctat 620
Query: 421 aataaccacacctccttgttcaactctatgcaataaacatgctcagcttcaggatgctga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aataaccacacctccttgttcaactctatgcaataaacatgctcagcttcaggatgctga 680
Query: 481 ggtttcgctatcagacaggacagtccattcaattcctgtactccctcccccccccctctc 540
|||||| ||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct: 681 ggtttcactatcagacaggacagtccattcaattcctgtactcccttccccc----t-tc 735
Query: 541 tctctctctctctctctctctctcaactttcctctttctttcttgccctc 590
| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 t-t-tctctctctctctctctctcaactttcctctttctttcttgccctc 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_g15.g1 MSMg01no422_g15.g1 CHROMAT_FILE:
MSMg01no422_g15.g1 PHD_FILE: MSMg01no422_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:51 2005
(550 letters)
>mm_chr2_7612177_7613126
Length = 950
Score = 582 bits (301), Expect = e-170
Identities = 313/317 (98%)
Strand = Plus / Minus
Query: 1 tctgtttttatctgtaacccaattcttaattgggttgcttacttgatgtctattttcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tctgtttttatctgtaacccaattcttaattgggttgcttacttgatgtctattttcatt 258
Query: 61 agtgttttctacgttttgaatcttagatctctatcatatgtgtagtaattaatataaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agtgttttctacgttttgaatcttagatctctatcatatgtgtagtaattaatataaaag 198
Query: 121 tgtatgtatttatgtctgggtctttaatttgattccactgatcaacatgtctgcttttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tgtatgtatttatgtctgggtctttaatttgattccactgatcaacatgtctgcttttat 138
Query: 181 gtctatagccatgttgattttattatagctctgtattttaatttgaggttgggaatgatg 240
| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gccaatagctatgttgattttattatagctctgtattttaatttgaggttgggaatgatg 78
Query: 241 atatatccatcatttattctattactcaggattttttctttgatagtctgggatttttgt 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 atatatccatcagttattctattactcaggattttttctttgatagtctgggatttttgt 18
Query: 301 gtttctatatgaagttg 317
|||||||||||||||||
Sbjct: 17 gtttctatatgaagttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
