BAC Information

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BAC

Clone NameMSMg01-422I19
Chromosome2 (Build37)
Map Location 136,808,597 - 136,808,985
singlet/doubletsinglet
Overlap gene2210009G21Rik
Upstream genePlcb4, 6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911, Mkks
Downstream geneJag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422I19.T7 (MSMg01no422_i19.b1)MSMg01-422I19.TJ (MSMg01no422_i19.g1)
ACCAG516912AG516913
length731733
length of high quality
(start - end)
590 (62 - 651)312 (319 - 630)
definitionCHROMAT_FILE: MSMg01no422_i19.b1 PHD_FILE: MSMg01no422_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:01 2005CHROMAT_FILE: MSMg01no422_i19.g1 PHD_FILE: MSMg01no422_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTATC
AGATTTCCAAAGAAGACCTAATACCAATACTCTTCANACTATTCCACAAA
ATAAAAATAGAAGAAACACTACCTAATTCGTTCTATGAAACCACAGTTAC
TCTGAGTATTCTCCCTTGGAGATGGAACAGTTTTTGTCTAATCAGGAACT
TGCCACAATTTCCTTTCATAGAGGACATCATAGAGATTTTTTTCTACTTC
GATCATGTTTAATGTTCCAAATAGATTTTAAAAACTGGTTGAGTGCATAT
TACTTTTAGCTTCTTAAGATATCATGTATATTTAAGAGGCATTTAACTAT
TATAAATTATTTTGATGACTCAAAAATGTCAATACTGAGTTGTATATTTA
AAATATATTTAATTAGTTTAATAAAAAAGAAAAAGGGATCATTATGGAAA
AGACACAGACTTCTGCCTCCTGTCAATGACATATAATTGAAAGACAAATG
ATAAGCTTACTAAGAATTACCAAGCCACAATTACTCTGATACCTAAACCA
CACAAAGACCCAACAAAGAAAGAGAACTTCAGAACAATTTCCCTTATGAA
TATCGATGCAAATATACTCAATAAAATTCTTACAAACTGAATCCAAGAAC
ACATCATAATGATCATCCAACATGATCAAGTAGGCTTCATCCCAGGAATG
CAGGGATGCTTCATTATATGGAAACCCATCC
GTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTTCAGAAATTCTGGANATGAGAATCATGATGCTGCCAGCCAGGTAAAGG
GAGCTTCACTTGAGTATGCAGTCATGGGTTTCGATGAAGAAGACACAAAG
GAAAACTGCAGAAATCCTTGGTGGAGGCCAGGTGGGAAGTGGTGTTCATC
AGAACCAAGGTTCTATCTTCTGCTTCATTGTTTGCCTTCTGTCGTTGGGC
TGGTATATGCTCAATAAAAAGCAAGTGAATAAGTAGCTAGTGACCACCAG
AGATGGAGTTTCTCATAGTACAGGAATGTCGAGTTCCATGAGGCTGGAGC
ATCTGGCAGACGGTATGCCTCACAGCAAGCCATGCAGCTTATCGCAAGAG
CCGAGGCAAGATTTCAGAGAGAAGAGGCTGGCTATTAATAATTCCGAGAG
TGGGTCCTAAAGTGCAGCTGACTTGGACAAATTGGGATGTATGGTTAGCT
TCTTATAGAGTTAGTCTATGTTCAGTCCTAGGAACAGACTGAAGGTGAAT
TGATGGAGGGACCACAAGAGAGTGCTGCAGAGGACCAAGCAAAACAAAGT
GGTGGCTTGGATTGTAGGAGGAACTGGGTACCTGGGACTCCAGGATGGTT
TTTGTCTGTGACTTCTGGAGAAGGGAGTGTCAAGTCTTAAAACCAGAAAG
GGCATGCTTCCCTTGACCTAAAACTGCAGAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_i19.g1 MSMg01no422_i19.g1 CHROMAT_FILE:
MSMg01no422_i19.g1 PHD_FILE: MSMg01no422_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:01 2005
         (312 letters)



>mm_chr2_136808474_136809185
          Length = 712

 Score =  404 bits (209), Expect = e-117
 Identities = 308/389 (79%), Gaps = 77/389 (19%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacaggaatgtcgagttccatgaggctggagcatctggcagacggtatgcctcacagcaa 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tacaggaatgtcaagttccatgaggctggagcatctggcagacggtatgcctcacagcaa 183

                                                                       
Query: 61  gccatgcagcttatcgcaagagccgaggcaagatttcagagagaagaggctggctattaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 184 gccatgcagcttatcgcaagagccgaggcaagatttcagagagaagaggctggctaataa 243

                                                                       
Query: 121 taattccgagagtgggtcctaaagtgcagctgacttggacaaattgggatgtatggttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 taattccgagagtgggtcctaaagtgcagctgacttggacaaattgggatgtatggttag 303

                                                                       
Query: 181 cttcttatagagttagtct--------a-------tg-----------------ttc--- 205
           ||||| |||||||||||||        |       ||                 |||   
Sbjct: 304 cttctcatagagttagtcttttctctgagaacaactgaaagaaagctctcaaagttcttc 363

                                                                       
Query: 206 -agt-----------------------------------------cctaggaacagactg 223
            |||                                         |||||||||||||||
Sbjct: 364 tagtggagtagaggctggggacaaagttgaacccagtttgatccccctaggaacagactg 423

                                                                       
Query: 224 aaggtgaattgatggagggaccacaagagagtgctgcagaggaccaagcaaaacaaagtg 283
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aaggtgaattgatggagggaacacaagagagtgctgcagaggaccaagcaaaacaaagtg 483

                                        
Query: 284 gtggcttggattgtaggaggaactgggta 312
           |||||||||||||||||||||||||||||
Sbjct: 484 gtggcttggattgtaggaggaactgggta 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)