BAC Information

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BAC

Clone NameMSMg01-422L15
Chromosome2 (Build37)
Map Location 82,105,120 - 82,105,660
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040704, Zfp804a
Downstream geneLOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422L15.T7 (MSMg01no422_l15.b1)MSMg01-422L15.TJ (MSMg01no422_l15.g1)
ACCAG517048AG517049
length719718
length of high quality
(start - end)
584 (42 - 625)507 (72 - 578)
definitionCHROMAT_FILE: MSMg01no422_l15.b1 PHD_FILE: MSMg01no422_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:14 2005CHROMAT_FILE: MSMg01no422_l15.g1 PHD_FILE: MSMg01no422_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCCCAAAACTCCGTTTTTGTAGTCTTAATTTTTTTCTACATATTAAATT
CTCTACATATTTTAAACAAGTAAGATTCAAATTAATGCTCTGAGATTCAA
CTAATCTTCTTATTTCATTCAACTTATCTTCTATTCCAACGGTTTTACAA
GTGGCTATTACTTTGACTTAAGTGAGTTGGCAGGAAATCAATCTTCATAT
TACAATGATAAGCCTAAAAGAGATTATAGGTCTTATTAAATGGTTTTTTA
TTCCAAGAACAGCTGAAATGGAAAAGGCTAGAACTATTAGCATGTACTAT
AATCACACACACACACACACACACACACACACACACACACACACACACAG
ACACACAGACACACACACACACACACACAGGCAATCCAGATTTCCTAAGT
AATGTGGAGAAAGCTAGAGTATTTGAAATATATTTTAAATATTACCAAAT
ATAATAAACCTTTTGGCATCCAAGCATATTTTTATCTGTTTGCAAGTTAT
AATGTCATTTCCAGTGCTGTCCCTTTCGGTTGATATATATATATATATAT
ATATATATATATATATATATATATATATAAAGGGGNNNNTTTATTANTAT
NNNNGGATTTTTTTTTTTNNTAAATAATAATATAAAATATAAATTAATTT
TTAATTNAATATAATTNTN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGTTTTATGTTTGATGCCAAATTCTTTA
CAAAATTAAGTAAAATTCTTGCTAGAATAGGATGCCCCATTATCTGTCTT
AATAAGTTTAGGCAATCCCATGACATTAAAGGCTTGTAGGCAATGGTCAA
TTACATTTTTAGAGGCCTCTCCTGTATGCAGAGAAGCAAAAGGAAATCTT
GAACAAGTGTCAATATAAACATGTATATATTTTAATTTTCCAGATTCTGC
ATAATGAGTTACATCCATTTGTTTTATATAATTAGGCATAGGACGCCGTG
GATTAACCCCTAAATGTGGCACTGGAGATAATGTAACACATTTAGGATAT
TGTTTTACAATATCTGGCTCTTTACCAAAATAAGTTAGTGCCTGCTTCTT
TCCAAGGATAACCATCTGAGCTACTGCTTCATAATATGGCAAGATATTAC
GTTTAGGAGAAAACCTCGAATTTATCTACTTTAGAAGAGACTTTTGCCAT
AATAATCCTGTAGACATATGAATCGTATTTAAAATTAACAGATGTAAAGC
AAAGACTAATCTATATAAGTGACAAATTGCTCTTTCATAGCTGTTTCCAC
TTGTTGTAAGGTCAGCAATCCCTCCGAGGNTTAAAGACCTAGGGGAAGGT
TGGAACCTAACTCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_l15.b1 MSMg01no422_l15.b1 CHROMAT_FILE:
MSMg01no422_l15.b1 PHD_FILE: MSMg01no422_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:14 2005
         (584 letters)



>mm_chr2_82104916_82105896
          Length = 981

 Score =  913 bits (472), Expect = 0.0
 Identities = 535/580 (92%), Gaps = 39/580 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcccaaaactccgtttttgtagtcttaatttttttctacatattaaattctcta 64
           ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcccaaaactctgctcttgtagtcttaatttttttctacatattaaattctcta 264

                                                                       
Query: 65  catattttaaacaagtaagattcaaattaatgctctgagattcaactaatcttcttattt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 265 catattttaaacaagtaagattcaaattaatgctctgagattcaactaatctt---attt 321

                                                                       
Query: 125 cattcaacttatcttctattccaacggttttacaagtggctattactttgacttaagtga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cattcaacttatcttctattccaacggttttacaagtggctattactttgacttaagtga 381

                                                                       
Query: 185 gttggcaggaaatcaatcttcatattacaatgataagcctaaaagagattataggtctta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gttggcaggaaatcaatcttcatattacaatgataagcctaaaagagattataggtctta 441

                                                                       
Query: 245 ttaaatggttttttattccaagaacagctgaaatggaaaaggctagaactattagcatgt 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 442 ttaaatggttttttattccaagaacatctgaaatggaaaaggctagaactattagcatgt 501

                                                                       
Query: 305 actataatcacacacacacacacacacacacacacacacacacacacacacacagacaca 364
           ||||||||||||||||||||||||||||                          ||||||
Sbjct: 502 actataatcacacacacacacacacaca--------------------------gacaca 535

                                                                       
Query: 365 cagacacacacacacacacacacaggcaatccagatttcctaagtaatgtggagaaagct 424
           ||||||||||||||          ||||||||||||||||||||||||||||||||||||
Sbjct: 536 cagacacacacaca----------ggcaatccagatttcctaagtaatgtggagaaagct 585

                                                                       
Query: 425 agagtatttgaaatatattttaaatattaccaaatataataaaccttttggcatccaagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agagtatttgaaatatattttaaatattaccaaatataataaaccttttggcatccaagc 645

                                                                       
Query: 485 atatttttatctgtttgcaagttataatgtcatttccagtgctgtccctttcggttgata 544
           ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 646 atatttttatctgtttgcaagttgtaatgtcatttacagtgctgtccctttcggttgata 705

                                                   
Query: 545 tatatatatatatatatatatatatatatatatatatata 584
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tatatatatatatatatatatatatatatatatatatata 745



 Score = 83.9 bits (43), Expect = 3e-20
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                      
Query: 542 atatatatatatatatatatatatatatatatatatatatata 584
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 atatatatatatatatatatatatatatatatatatatatata 704



 Score = 83.9 bits (43), Expect = 3e-20
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                      
Query: 542 atatatatatatatatatatatatatatatatatatatatata 584
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 atatatatatatatatatatatatatatatatatatatatata 706



 Score = 83.9 bits (43), Expect = 3e-20
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                      
Query: 542 atatatatatatatatatatatatatatatatatatatatata 584
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 atatatatatatatatatatatatatatatatatatatatata 708



 Score = 83.9 bits (43), Expect = 3e-20
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                      
Query: 542 atatatatatatatatatatatatatatatatatatatatata 584
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 atatatatatatatatatatatatatatatatatatatatata 710



 Score = 83.9 bits (43), Expect = 3e-20
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                      
Query: 542 atatatatatatatatatatatatatatatatatatatatata 584
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 atatatatatatatatatatatatatatatatatatatatata 712



 Score = 81.9 bits (42), Expect = 1e-19
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                     
Query: 542 atatatatatatatatatatatatatatatatatatatatat 583
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atatatatatatatatatatatatatatatatatatatatat 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 98
Number of extensions: 44
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 11
Length of query: 584
Length of database: 981
Length adjustment: 10
Effective length of query: 574
Effective length of database: 971
Effective search space:   557354
Effective search space used:   557354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)