Query= MSMg01no423_c19.b1 MSMg01no423_c19.b1 CHROMAT_FILE:
MSMg01no423_c19.b1 PHD_FILE: MSMg01no423_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:47 2005
(576 letters)
>mm_chr2_92701779_92702755
Length = 977
Score = 891 bits (461), Expect = 0.0
Identities = 476/483 (98%), Gaps = 5/483 (1%)
Strand = Plus / Minus
Query: 95 gtcagctcaaggactgcctaggacatcaggacattggtgaaaggccaggaagcaagcaaa 154
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 977 gtcagctcaaggactgcctaggacatcaggacattggtgaaaggccagg----aagcaaa 922
Query: 155 gttaaatctaacttatctatttgtcaaatcattccttggaggcacctataataaaacaat 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gttaaatctaacttatctatttgtcaaatcattccttggaggcacctataataaaacaat 862
Query: 215 actgaaagaaagcacacagaaccattcactgactaatgcaaggaaagtttggagcattca 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 actgaaagaaagcacacagaaccattcactgactaatgcaaggaaagtttggagcattca 802
Query: 275 tgctacgggatgccaaggctccaggagaccagtttccgtgaaactttttgcttcaggact 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgctacgggatgccaaggctccaggagaccagtttccgtgaaactttttgcttcaggact 742
Query: 335 gtgtccaagcttttgggcttgtcaaacagtttccactagagtgggtatggcatgcatcca 394
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 741 gtgtccaagcttttgggcttgtcaaacagtttccactagagtgggtgtggcatgcatcca 682
Query: 395 ttctaccaaccccactttctc-aaaaaaaaaaaatatcatcctttaaaaacaaaacaaaa 453
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctaccaaccccactttctcaaaaaaaaaaaaatatcatcctttaaaaacaaaacaaaa 622
Query: 454 ggcaatttagccatcagttgattaacatcttcaactctttttgtgagacagggtctcatg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcaatttagccatcagttgattaacatcttcaactctttttgtgagacagggtctcatg 562
Query: 514 tacaccaagataacctcccatagaacaatgctttggattcttgttcctcctgctccattt 573
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 tacaccaagataacctcccatagaacaatgctttggattcttgtttctcctgctccattt 502
Query: 574 ccc 576
|||
Sbjct: 501 ccc 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 977
Length adjustment: 10
Effective length of query: 566
Effective length of database: 967
Effective search space: 547322
Effective search space used: 547322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_c19.g1 MSMg01no423_c19.g1 CHROMAT_FILE:
MSMg01no423_c19.g1 PHD_FILE: MSMg01no423_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:47 2005
(495 letters)
>mm_chr2_92535755_92536649
Length = 895
Score = 882 bits (456), Expect = 0.0
Identities = 485/502 (96%), Gaps = 14/502 (2%)
Strand = Plus / Plus
Query: 1 acccagggcattctgaatgttaggcaagtactctatcaactgagctgcagcctcagtccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccagggcattctgaatgttaggcaagtactctatcaactgagctgcagcctcagtccc 260
Query: 61 agctctctccctcttattcagtttaagaacccagactatgggctgcttctgcctaccttc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 agctctctccctcttattcagtttaagaacccagactatgggctgcttctgcctacattc 320
Query: 121 agggtaggttttccctctttagttaagcctttctggaaaagccctcatagacatgctcag 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggtgggttttccctctttagttaagcctttctggaaaagccctcatagacatgctcag 380
Query: 181 aggcttgtttccatggtgattctaaatctgtcatgttgacaatgaagattaaccaccgtg 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcttgtttccatggtgattcgaaatctgtcatgttgacaatgaagattaaccaccgtg 440
Query: 241 gtttt-------ctttaccaggcccagaatgctctggtgcacagcttgactgccaccctg 293
| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 g----gcaccagc---accaggcccagaatgctctggtgcacagcttgactgccaccctg 493
Query: 294 ctgtgcaatactgggcaaagcattgtacctctctgatctctgttgcttcgtctttaatta 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctgtgcaatactgggcaaagcattgtacctctctgatctctgttgcttcgtctttaatta 553
Query: 354 tatgcaataaacatctcagagaacccagctggctacaatacaatcttcacccctgctcag 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tatgcaataaacatctcagagaacccagctggctacaatacaatcttcacccctgctcag 613
Query: 414 ggggatgacatccatgtctcagcccctgcaggcctcttctagaaagggtgtggctctttg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ggggatgacatccatgtctcagcccctgcaggcctcttctagaaagggtgtggctctttg 673
Query: 474 ctgaaagtctggcagccagctg 495
||||||||||||||||||||||
Sbjct: 674 ctgaaagtctggcagccagctg 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
