BAC Information

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BAC

Clone NameMSMg01-423D19
Chromosome2 (Build37)
Map Location 173,585,381 - 173,585,721
singlet/doubletsinglet
Overlap geneVapb
Upstream geneBmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik
Downstream geneLOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423D19.T7 (MSMg01no423_d19.b1)MSMg01-423D19.TJ (MSMg01no423_d19.g1)
ACCAG517440AG517441
length751782
length of high quality
(start - end)
496 (58 - 553)341 (55 - 395)
definitionCHROMAT_FILE: MSMg01no423_d19.b1 PHD_FILE: MSMg01no423_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:52 2005CHROMAT_FILE: MSMg01no423_d19.g1 PHD_FILE: MSMg01no423_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCATTGCA
CTAAGGACCATGGACCTGGAAGACATGTTCAAACTACCAGAGATATGAGA
TAAATGCCTATCCAGACACAAACCTGTCTCAGTCAGTTTTCTGTGGCTGT
GAAGTGATACTATGACCACAACAATGCTTATTTAAAAAGGAGTTTAATTG
GGGCTGTCCTGCAGCTTCAGAGATATAAGTACATTGTCATCCATGCAGGG
AGCAGGGTGCCATGCAGGTGTGTATGCTGCTGGGATGCAGTTGAGAGTTC
TACTTACCTATCCATCAACAGCAAGAAAAGAGTCTTTGGACATGGTATGG
GCCGTTGAAACCTCACAGCCTGACCTTTCTCCAAGAAGACAACTCCTAAC
CTTTTAAAGTCGTGCCAACCCTGATGGCCAAACACTCAAGTATACAAGCC
TATGGAGACCATCCTTATTGAGTCTGTCACCAAATCCCTTGGTCTGCAAT
AGTGACACCACAATCTGGCTGCATTGAAGGCCCACTTCCTGAGATGGGCT
CCATGCCTGATAATGCTCAGGTATCCCAGAACCTGATAATAGACATATCA
TGGATCTAGGGGAAAACCCAGCTCATCGTCTGACTGTACGTATATATTTT
GCACTGCCTACCTTATTAAGTGGTCCACCCTCCCTTTTAATTTTCCACCT
CCCCTAAGTATCTTGGCGCATAAAATGGTATTATTAACCCGGGGTTAATA
C
CTGGCGGCCGCCTGTTTCCCGAATGTAGGTGACCTATAGAATTTCCAGCG
GAATTCCAGAGAGCTGCTATCCCACACACCCCTGGACTGTCTTAACACCT
AGTGTCTCATTTCTCTCTGGAGGCCAAGAACTTGTTGCCTCCAGCATCCA
GCTCCCCTTCCCTGTGGCTGTAAACCCTTTGGGCCAAGGCTAGCTGTCTC
CCATGCTTTCCCAGTAGGGGGAGGGGTTGGTTTTCAGTGGAGTCAGTTCT
GGATGTAGATGCATTCCAGATCCTTCAGGAAGTCCTCTCTCCTGTCTTCA
TTCTGGTTCCAAGAGGACCAGGGTCAGGGCTTCTTGAAAGATAGGTAGCA
GGAGGAGACCTCTTCAGGTGTTTAGATGTCCACGGTGCTGTCCCTGACAT
GAGAAGAGCTTCTAGGTAAATGATTGTCAAATGCTAGCCATCTTGCCACA
TGTACTGCAGTGTATCGTTGCATCCCTGCAAGTATTGAAGCGCATCCCAT
TGCAGTACACCATTTTCTGATTTAACACCATCTATCACCCTTGTATTGTC
CTTCCACCTTGGGTTCTCTGTTTGCACTTTCGCACCACTTTTTGCTTTTT
CACAACTTATGATGTGAGCAACGCTGTTTCTCTGTCGTCTCTTACCTCCA
CCCTGTATTATTTCTTTTTTTCCAACTGTTCTTGGCTTTGGTTACCTTTT
ATTTCTCTCATCCGCCTCCTATACTCTCCCATTCCGCTTCCACACTTTGT
TCCTCTCCCACACCACCCTCCATTTTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_d19.g1 MSMg01no423_d19.g1 CHROMAT_FILE:
MSMg01no423_d19.g1 PHD_FILE: MSMg01no423_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:52 2005
         (341 letters)



>mm_chr2_173585181_173585921
          Length = 741

 Score =  621 bits (321), Expect = 0.0
 Identities = 336/341 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccagagagctgctatcccacacacccctggactgtcttaacacctagtgtctcatttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccagagagctgctatcccacacacccctggactgtcttaacacctagtgtctcatttct 260

                                                                       
Query: 61  ctctggaggccaagaacttgttgcctccagcatccagctccccttccctgtggctgtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctggaggccaagaacttgttgcctccagcatccagctccccttccctgtggctgtaaa 320

                                                                       
Query: 121 ccctttgggccaaggctagctgtctcccatgctttcccagtagggggaggggttggtttt 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 ccctttgggccaaggctagctgtctcccatgctttcccagtggggggaggggttggtttt 380

                                                                       
Query: 181 cagtggagtcagttctggatgtagatgcattccagatccttcaggaagtcctctctcctg 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtggagtcagttctggatgtagctgcattccagatccttcaggaagtcctctctcctg 440

                                                                       
Query: 241 tcttcattctggttccaagaggaccagggtcagggcttcttgaaagataggtagcaggag 300
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttcagcctggttccaagaggaccagggtcagggcttcttgaaagataggtagcaggag 500

                                                    
Query: 301 gagacctcttcaggtgtttagatgtccacggtgctgtccct 341
           |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 gagacctcttcaggtgtttagatgtccatggtgctgtccct 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)