BAC Information

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BAC

Clone NameMSMg01-423M12
Chromosome2 (Build37)
Map Location 140,318,644 - 140,318,884
singlet/doubletsinglet
Overlap genenone
Upstream geneC130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik
Downstream geneFlrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423M12.T7 (MSMg01no423_m12.b1)MSMg01-423M12.TJ (MSMg01no423_m12.g1)
ACCAG517857AG517858
length741770
length of high quality
(start - end)
244 (59 - 302)---
definitionCHROMAT_FILE: MSMg01no423_m12.b1 PHD_FILE: MSMg01no423_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:32 2005CHROMAT_FILE: MSMg01no423_m12.g1 PHD_FILE: MSMg01no423_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCACATTTCAAAGAGGATCCGCGGAATTCAATATTG
CCGATGTAGGTATCCCCATCTTGTGATGCTTCAACTTATGTTTCTCACTA
ATTTATGATATTGTGAAAGTAATAAAATTTAGCCAAAACTTCCTTAAGTT
TTAGAGTTTGGTCTTTTCAGGACTAGCAGTATGTGGTATAGTACTTCTCT
CCATCACTGGCAGCAGCAGGAAGTTTGAAGCTGAGCTACTTGTGCCCATT
TGGACTTTCAGTCATCTATACACGCACAAATAAAGAATACCAGAGAGTCC
ACATGATTTTTAAGTCATAGCGTTTGGTAGGATAGATGCATCAAGTCCAC
TTTTGGCTTATTGTATTTTTAAGTTGTAATTACTTTTTTGTTTTTGTTTT
TGTTTTTGTGTTTTGTTTTTGTTTTTGTTTTTGACACAGGTTCTCTGGCA
ATCATAGAGCATCTGGGATAATAATGTCCCATTCTGTTTCCCCTTCAAAG
AGCTTTTGTTGTCACTGTTGGGAATACAACACGAAGAGCTGACTCCCTCC
TTGTGACGTGACTATTATGGTAAGGCTATCTTGGTCTGTATAGGGACCCC
CACTTGGGCCATCTATATTCTGTGTTTTCGCGGCTTTTTCTTTTTTTCTT
TTCTTTGCCCGTTTTAATTTACCCCCCCCTATCCATGTTTCTGTCTTTTC
TTCCTTTTCTCAAGTTTTTTCCCTTTCGCCTTCTTCCCCTG
AAGGCTTGGGGGCCGCCTGTCCAAAAAATTTAGGGGAACCTATAGATTTT
CTCGCGAAATTCATTAAAAGGGAATCCTAAAAGGGGCTTCAATCAGTTAT
AATTTGGCCTCTTTTTTTCCTCGGCATACCCTTTTGAAAACCGATCCGGG
TTAGGTCCAAAAGGCCCAATTAAACAATTCCGGAACCTGAGGTTTATGAA
ATAACAGCAAAAAAGGGTTTTTTTTTACCAAAATTACAAATCAAAACAGG
AATTTTGTCTTACTAAACGGGGGAACTAAAAAAAACCAAGGTTCCTTTGG
CTTTTTTTTGTTAATAAAGGAGCCTCCGATTCTATCAAACTTTTTTTAAA
CCTAAAGGAAGGGGGGGGAAATAAATTTGTTTGAAACCTTGCGGTGGTAA
AATTTTGGTATGGAGCTACAACTAACTTTTCCCCCAGTTCCTCCCCGGGC
TATATTGCCCAACTAAATAAAACCCCCCTTTTCTCTTCAAAGCCTCCCTG
CCAATGACTAGAATAACCCCTAACGACCCGTTCATCTCCTTCCCGATTAA
TAAAATACTCTTATCTCTCTGAAACTTGTGTACACACAACCCACTGTCTA
ACTTTTTCTTTTGTGCCCCTCCCGGGGCCGATTCCCCTCCAGTTTTTTAT
CAAAAGCCCCTTTCTTTCCGAATAAAATCCGAACCTATCGTGCATCCCTA
CTCTATGTTAATCTTTATTGCGTCCCCCCGCCTTCTACCCTCAACGTGCT
CCCCTTAGCCTTCCCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_m12.b1 MSMg01no423_m12.b1 CHROMAT_FILE:
MSMg01no423_m12.b1 PHD_FILE: MSMg01no423_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:32 2005
         (244 letters)



>mm_chr2_140318441_140319084
          Length = 644

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   atccccatcttgtgatgcttcaacttatgtttctcactaatttatgatattgtgaaagta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 204 atccccatcttgtgatgcttcaacttatgtttctcactaatttatgataatgtgaaagta 263

                                                                       
Query: 64  ataaaatttagccaaaacttccttaagttttagagtttggtcttttcaggactagcagta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ataaaatttagccaaaacttccttaagttttagagtttggtcttttcaggactagcagta 323

                                                                       
Query: 124 tgtggtatagtacttctctccatcactggcagcagcaggaagtttgaagctgagctactt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 tgtggtatagtacttctctccatcactggcagcagcaggaagtttgaagctgagccactt 383

                                                                       
Query: 184 gtgcccatttggactttcagtcatctatacacgcacaaataaagaataccagagagtcca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgcccatttggactttcagtcatctatacacgcacaaataaagaataccagagagtcca 443

            
Query: 244 c 244
           |
Sbjct: 444 c 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)