BAC Information

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BAC

Clone NameMSMg01-423O16
Chromosome2 (Build37)
Map Location 89,475,163 - 89,475,626
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1
Downstream geneOlfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423O16.T7 (MSMg01no423_o16.b1)MSMg01-423O16.TJ (MSMg01no423_o16.g1)
ACCAG517960AG517961
length753567
length of high quality
(start - end)		464 (50 - 513)---
definitionCHROMAT_FILE: MSMg01no423_o16.b1 PHD_FILE: MSMg01no423_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:43 2005CHROMAT_FILE: MSMg01no423_o16.g1 PHD_FILE: MSMg01no423_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:43 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAGAATAC
CGTGAAGATCCTTATAGTTGTTTATTACAAAAACTAAAGCCTTCTGTAAA
AGCTTTCACACATACAGAATGGCAGAACCATTGTCTCTCCTACAGTTATA
TATCCCAACATCACAGACTGTAGATCCATCCAGATCTGCAGTTCAAAGCA
GCTGGGCAGATCCTCTCTGACTACCAGTACAGAATTATGCTTTGCTGGGG
TGATGCGGAAAACTAGAACTCAGGTTGTTTTCTCCTTTTGGGTGTTTTAA
AACTATCTCATAGTCTCTTGATCAATTTATTTTATTATAGATTTTTCAAA
TCAACTTGGCTGTCAGCTACTCATTCTTGGCAAGACTTAAAGCTTTTATC
TCTAGGGATTATTAAAAAAAATCTGTTCAAAAGAGATGATCTCATTTGAA
TTTGTTCCAAATAGTTTAACAAGCTTATCTATTTAAATAGTGATGGTACA
AAAAGTTCATAGATAGAATTGTGATGTAGATGAAAGAATTTTTTTTTTAT
CAAATGGTCCAAGAAGTCCTCGGTACTTAATATTTTATGTACCCCAGCCT
TATATGTTAACATAATTTATGACAGCCTGTGGAAGGCTCAGTTTCTTAGG
GGGTCTAAATACAAAACATGGTTTTATAAAAAAAAAAAGAATTTGGGGGA
GACCAACTGTCGTGCAAATCTTAAAGTCCTGGCATATTATCGCAAACCTC
CCC

TTTTTCTCCTTTCTCTTACTCTTTCTCTCTCCTTCCTCCTCCCTTTTCTT
TTCTCCTATTTTCGAATTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGAGACTGT
GGGCACCATTACACATGGGCCCTGCATTAATTCCTCCAAGCCCAAATGAG
GGCCCCATGGCCACTGGAAAAGAAGCCAGGGGAACAAAACGGATATAAAA
AGGAAGCGGGAATGCCCATACCACTTCTTCCTCTTCTATTCCTTCTTCTC
CTCCTTTTACTTTTTTCCCACCAACCTTCCTCCCTCCCCTCTTCTCCCTT
TCTATTCTTTCTCCCCTTTTTTCTCCCTTCCCCTACTCCTCTACCTCTCC
TCTTTTTTCTTCCACATTCTCCTTTTTTCTCCCTTCCCCTCCTATCTTTT
TTATTTCCCCCCCACCCCTTTCCCCCTTTTTTCCCCCCCCCACATCCATT
CACTCTCCTTCTCCCTCCTTTTCTTCTCACCTTTTCCCCCTTTTCCTTTT
CTCTCCTTTCTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_o16.b1 MSMg01no423_o16.b1 CHROMAT_FILE:
MSMg01no423_o16.b1 PHD_FILE: MSMg01no423_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:43 2005
         (464 letters)



>mm_chr2_89474963_89475826
          Length = 864

 Score =  890 bits (460), Expect = 0.0
 Identities = 463/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgtgaagatccttatagttgtttattacaaaaactaaagccttctgtaaaagctttcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ccgtgaagatccttatagttgtttattacaaaaactaaagccttctgtaaaagctttcac 605

                                                                       
Query: 61  acatacagaatggcagaaccattgtctctcctacagttatatatcccaacatcacagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 604 acatacagaatggcagaaccattgtctctcctacagttatatatcccaaaatcacagact 545

                                                                       
Query: 121 gtagatccatccagatctgcagttcaaagcagctgggcagatcctctctgactaccagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gtagatccatccagatctgcagttcaaagcagctgggcagatcctctctgactaccagta 485

                                                                       
Query: 181 cagaattatgctttgctggggtgatgcggaaaactagaactcaggttgttttctcctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cagaattatgctttgctggggtgatgcggaaaactagaactcaggttgttttctcctttt 425

                                                                       
Query: 241 gggtgttttaaaactatctcatagtctcttgatcaatttattttattatagatttttcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gggtgttttaaaactatctcatagtctcttgatcaatttattttattatagatttttcaa 365

                                                                       
Query: 301 atcaacttggctgtcagctactcattcttggcaagacttaaagcttttatctctagggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atcaacttggctgtcagctactcattcttggcaagacttaaagcttttatctctagggat 305

                                                                       
Query: 361 tattaaaaaaaatctgttcaaaagagatgatctcatttgaatttgttccaaatagtttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tattaaaaaaaatctgttcaaaagagatgatctcatttgaatttgttccaaatagtttaa 245

                                                       
Query: 421 caagcttatctatttaaatagtgatggtacaaaaagttcataga 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 caagcttatctatttaaatagtgatggtacaaaaagttcataga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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