BAC Information

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BAC

Clone NameMSMg01-423P13
Chromosome2 (Build37)
Map Location 26,911,526 - 26,911,870
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315
Downstream gene1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3, Wdr5, Rxra, Col5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423P13.T7 (MSMg01no423_p13.b1)MSMg01-423P13.TJ (MSMg01no423_p13.g1)
ACCAG518001AG518002
length735741
length of high quality
(start - end)
517 (62 - 578)345 (56 - 400)
definitionCHROMAT_FILE: MSMg01no423_p13.b1 PHD_FILE: MSMg01no423_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:47 2005CHROMAT_FILE: MSMg01no423_p13.g1 PHD_FILE: MSMg01no423_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTAAACGACTCACTAATCGAAGAGGATCCGCGGAATTCTCAGATT
TCTAAACAGCAACAACAGAATTAAACACCAAGCCCACAAATAATCCAGTG
AGGACAGACCCTGAAAAAGAAGGGAAATGCAAATGGCCAATAAACATGTG
AAAAATCGTTCGAGGTCTTCAGTTATGAAGAAATGCAAATCAGCACTATG
CTGATAGCCTATCTCACCAATCAGAGTGGCTGACACCAAGGAAAGAATTG
GCAGCCATTGCCGATGTGGATGCAGGGAGAGAGCAACCCTTATCTACTAC
TTTCTTTTTTTTGTAGATCAAACTGGCAAAGGTACTTTCGTGTGACTCGG
TCATGCCCTTTTGCTGTCTACCGAAAGGCTCAGAGTTAGCATGCCACACA
AGTACCTGACAGCCATGTTACTGCAGTAGTGTTCTTAGTCAAGATAGAGA
GCCAGAATAGGTGCCCATCAGTGCATGAATCTTATTTTATTTTATTTTAT
TTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTAT
TTTATTTTATTTTATTTTATTGAGACTNGGCTTCACTATGTAGACTTGTC
TGGTCTGGACTTACTATGTAGAACAGGCTGGGCATGAATTCTTTTTTTCT
GCCTGTCTCTGCCTCCTGATGTCTAAGATTAAAGGTGTGCGCCATCATGC
TCAGCCCACATAGTGAATTTTATCCACTGTTGTTT
AGGCCTGGCGGNCGCCTGGTCAACTAATTTAGGTGAACTATAGAAGTTCT
GCGAAATTCTCTGGGTGTGCTGGGGGGTTGGTGGCCCCTTTATCTCCACT
GCCTCCTTGTGTGGCCCAAAGTACTCCTGCTGGAGGTGCTGGGGACTATG
GAGTGGGTACTTCAGAGCTGGTTCTATTTTGCTGCCAGAGAACACACAGA
CCAGGATGGGCCAAAGGCAAGGCCTCTGTGGCCAGTGGCTCATTTGCTCA
TCTCCTGGGCAGAAGCCCACCCTCAGTATGGCAGAGGTGAGAATCCAACT
TCTCTTCTCCCGATCATCTATGCCTGGTGTGTCACTCCAGGGCATGGGAC
CATGTCACAAAGGTGATGTCCTCACAGCAGCCAGGCTTCCAGGCATCCCA
GGGGTCAAGTGTCCCCTGGCCTGGTGTGGTCTGGTACCCTGATGTGTGCT
ATAACCTGCTCTGCGGTGAACTATCTCTTTCCTCTTCCTCCTGGCCCACA
TATGGCTCTTGGACGCCACATTCCAACGATACAGTGGCCACTACTGTTTC
TGTATCCTAGGTTGTCCCCCCCTATTTACGTATCCACTGGCCTCCCTACC
CCCCCGTATAGCCCTGCCCCGTCCCCCCCGCTTTCTCTGTTTTTTTATAC
CGTCGTTGCTGTCTTTCTCTATTTTCTCCCTCCCCCGTTTTATGGCCCCC
CGGCTCCCCTTCTTGCCCCTCCCCCCCCCCTACTTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_p13.g1 MSMg01no423_p13.g1 CHROMAT_FILE:
MSMg01no423_p13.g1 PHD_FILE: MSMg01no423_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:47 2005
         (345 letters)



>mm_chr2_26911326_26912070
          Length = 745

 Score =  598 bits (309), Expect = e-175
 Identities = 336/345 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctctgggtgtgctggggggttggtggcccctttatctccactgcctccttgtgtggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctctgggtgtgctggggggttggtggcccctttatctccactgcctccttgtgtggc 260

                                                                       
Query: 61  ccaaagtactcctgctggaggtgctggggactatggagtgggtacttcagagctggttct 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ccaaagtactcctgctggaggtgctggggactgtggagtgggtacttcagagctggttct 320

                                                                       
Query: 121 attttgctgccagagaacacacagaccaggatgggccaaaggcaaggcctctgtggccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttgctgccagagaacacacagaccaggatgggccaaaggcaaggcctctgtggccag 380

                                                                       
Query: 181 tggctcatttgctcatctcctgggcagaagcccaccctcagtatggcagaggtgagaatc 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tggctcatttgctcatctcctgggcagaagcccaccctcagtagggcagaggtgagaatc 440

                                                                       
Query: 241 caacttctcttctcccgatcatctatgcctggtgtgtcactccagggcatgggaccatgt 300
           ||||||| |  | || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 caacttcccagcacctgatcatctgtgcctggtgtgtcactccagggcatgggaccatgt 500

                                                        
Query: 301 cacaaaggtgatgtcctcacagcagccaggcttccaggcatccca 345
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacaaaggtgatgtcctcacagcagccaggcttccaggcatccca 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)