BAC Information

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BAC

Clone NameMSMg01-425B22
Chromosome2 (Build37)
Map Location 97,138,242 - 97,138,659
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043267
Downstream geneLrrc4c, LOC621146, LOC664974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425B22.T7 (MSMg01no425_b22.b1)MSMg01-425B22.TJ (MSMg01no425_b22.g1)
ACCAG518877AG518878
length776772
length of high quality
(start - end)
580 (30 - 609)426 (61 - 486)
definitionCHROMAT_FILE: MSMg01no425_b22.b1 PHD_FILE: MSMg01no425_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:15 2005CHROMAT_FILE: MSMg01no425_b22.g1 PHD_FILE: MSMg01no425_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCTATACGACTCACTATATTTCGAGGATCCGCGGAATTCTTTGTTTAG
TCCTGAGCCCCATTTTTTTAATTTATTTTTTTATTAGGTATTTTCCTCGT
TTACATTTTCAATGCTATCCCAAAAGTCCCCCATACCCACCCCTCAATCC
CCTACCCACCCACTCCCCCTTTTGGCCCTGGGGTTCCCCTGTACTGGGGC
ATATAAAGTTTGCAAGTCCAATGGGACTCTCTTTGCAGTGATGGCCGACT
AGGCCATCTTTTGATACATATGCAGTTAGAGACAAGAGCTCCAGGGTACT
GGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCT
CCTTGGGTAATTTCTCTACTGAGCCCCATTTTTTAATGGAGTTATTTGAT
ATTCTGGAGTCCACCTTCTTGAGTTCTTTATATTTATTAGATATTAGTCC
CCTATTTGATTTAGGATAGTTAAAGATCCTTTCCCAATTTGTCGTTGGCC
TTTTTGTCCTATTGACTGTATCTTTTGCCTTACAGAAGCTTTGCAATTTT
ATGAGGTCCCATTTGTTGATTCTTGATCTTACAGCACAAGCCATTGCTGT
TCTATTCAGGAATTTTCCTCCTGTGCCCATTTCTTTGAGGNTTTTCCCCA
CTTTATCCACTATAAGTTTAACTGTCTCTGGTTTTATGTGGAGTTCTTTG
ATCCACTTAGATTTTGACTTAGTACAAGGAGATTGGAATGGACAAATCCT
AATCTTCTACATGATAAACACCACTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXACTTTGTAGACCAGGCCGGCCTTGAACTCAGAAATCCACC
TGCTTCTGCCTCCCAAGTGCTGGGATTAAATGTGTGTGCCACCACCGCCT
GGCTTGGACATTTCTTTTTTAAGTGCTCCTTGGCCATTCAAGATTCATTT
ATTGAGAATTCTATGCTTAACACTGTACTCCATTTTTAATTGGGTTATTT
GGTTTTTAAGAGCTCATAGGTGTCAGGGTGAACATAACATTGAAAAAAAA
AACAAAAAAAAAACTAGGAGCCACAAAAGGGTTGCTTCTCTGACTGTCAG
CAGGTGAACATAGAGTGTAAAGATACAAGAGAAATATCTAACCACGCCCT
TTCCACATTTCCCTTTCATTTCCTCATTCTCCTGAAGTGAACCTGAATTC
CACTTGGGTTACTTGTGGGATCTTTCGCTATTGTCTTGTCTGTACTTACA
TTTAATTCTTTTATAATTGTGACTGCTCTCACAAATATTTTTCACTACTA
CCTAGGGTGGACTTTGTGAGCTTTAAGGCAGACTCTATTTTTATTGCCCT
TGAATGGATGGTAAATTCCCTGTATGGCCTCACCACAAGGAAGCTTTTTT
TTCTGAATTATGTAACACCCCCGGGGAAAAATCCCTGAAACCCCAGGAAA
TGGTAAAAAGGCCCGGCCTAAACCACCATCCCTTTTACTCGACCCCTTTA
AGGGGGAAAACACCCCCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_b22.g1 MSMg01no425_b22.g1 CHROMAT_FILE:
MSMg01no425_b22.g1 PHD_FILE: MSMg01no425_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:15 2005
         (426 letters)



>mm_chr2_97138035_97138859
          Length = 825

 Score =  762 bits (394), Expect = 0.0
 Identities = 415/426 (97%), Gaps = 8/426 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgtagaccaggccggccttgaactcagaaatccacctgcttctgcctcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 actttgtagaccaggccggccttgaactcagaaatccacctgcttctgcctcccaagtgc 267

                                                                       
Query: 61  tgggattaaatgtgtgtgccaccaccgcctggcttggacatttcttttttaagtgctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tgggattaaatgtgtgtgccaccaccgcctggcttggacatttcttttttaagtgctcct 327

                                                                       
Query: 121 tggccattcaagattcatttattgagaattctatgcttaacactgtactccatttttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tggccattcaagattcatttattgagaattctatgcttaacactgtactccatttttaat 387

                                                                       
Query: 181 tgggttatttggtttttaagagctcataggtgtcagggtgaacataacattgaaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 388 tgggttatttggtttttaagagctcataggtgtcagggtgaacataacatt-aaaaaaaa 446

                                                                       
Query: 241 aacaaaaaaaaaactaggagccacaaaagggttgcttctctgactgtcagcaggtgaaca 300
           ||       |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aa-------aaaactaggagccacaaaagggttgcttctctgactgtcagcaggtgaaca 499

                                                                       
Query: 301 tagagtgtaaagatacaagagaaatatctaaccacgccctttccacatttccctttcatt 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 500 tagagtgtaaagatacaggagaaatatctaaccacgccctttccacatttccctttcgtt 559

                                                                       
Query: 361 tcctcattctcctgaagtgaacctgaattccacttgggttacttgtgggatctttcgcta 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcctcattctcctgaggtgaacctgaattccacttgggttacttgtgggatctttcgcta 619

                 
Query: 421 ttgtct 426
           ||||||
Sbjct: 620 ttgtct 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 825
Length adjustment: 9
Effective length of query: 417
Effective length of database: 816
Effective search space:   340272
Effective search space used:   340272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)