Query= MSMg01no425_d09.b1 MSMg01no425_d09.b1 CHROMAT_FILE:
MSMg01no425_d09.b1 PHD_FILE: MSMg01no425_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:22 2005
(639 letters)
>mm_chr2_159722250_159723288
Length = 1039
Score = 1125 bits (582), Expect = 0.0
Identities = 630/664 (94%), Gaps = 29/664 (4%)
Strand = Plus / Plus
Query: 5 gaattcacaaagcatgcagcatttggtcagggagactgatgaggcttttgagctaaaagc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gaattcacaaagcaggcagcatttggtcagggagactgatgaggcttttgagctaaaagc 235
Query: 65 atgaaggagcctggataaaaagcatctttgtgattctgtcttataaaacaaagtagggtc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 atgaaggagcctggataaaaagcatctttgtgattctgtcttataaaacaaagtagggtc 295
Query: 125 aaggatcgtgttcccaacatccctagtggatgctgatggacctctattgcttgttctagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aaggatcgtgttcccaacatccctagtggatgctgatggacctctattgcttgttctagg 355
Query: 185 aatgtgcaaaaaagaagaagcaccccaaatttatgttctacccagccaccaagagctcag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aatgtgcaaaaaagaagaagcaccccaaatttatgttctacccagccaccaagagctcag 415
Query: 245 ggccaggcctcatttgcatataaatgcttataatgtttaaattatagattaataccatcc 304
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gtccaggcctcatttgcatataaatgcttataatgtttaaattatagattaataccatcc 475
Query: 305 tgtgctcttgttcttcccttgatatagaaacaatagtgacttaaattcatgaaccccaac 364
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 476 tgtgctcttgttcttcccttgatatagaaacaatagtgtcttaaattcatgaaccccaac 535
Query: 365 aacaaaagcagacagatatatatatatatatatatatata--------------ctcctt 410
|||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 536 aacaaaagcagacatatatatatatatatatatatatatatatatatatatatactcctt 595
Query: 411 acttcttgcttttcttaaattctttcttcttccccaagtgggaaaaacaaaacaaaacaa 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 acttcttgcttttcttaaattctttcttcttccccaagtgggaaaaacaaaacaaaacaa 655
Query: 471 aacaaaa---------------acaaacaaattaaaaaaaaaaacattggaagtttcaag 515
||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 656 aacaaaacaaaacaaaacaaaaacaaacaaatttaaaaaaaaaacattggaagtttcaag 715
Query: 516 gaaggagtcaaagttgctatagtctattttaaaatattaaatcctttgcttactttctgg 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gaaggagtcaaagttgctatagtctattttaaaatattaaatcctttgcttactttctgg 775
Query: 576 gatactttggttgggtcccttcacctttccatcaccagccctgttatttctaacaagggc 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gatactttggttgggtcccttcacctttccatcaccagccctgttatttctaacaagggc 835
Query: 636 caca 639
||||
Sbjct: 836 caca 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_d09.g1 MSMg01no425_d09.g1 CHROMAT_FILE:
MSMg01no425_d09.g1 PHD_FILE: MSMg01no425_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:22 2005
(540 letters)
>mm_chr2_159729877_159730814
Length = 938
Score = 893 bits (462), Expect = 0.0
Identities = 520/544 (95%), Gaps = 15/544 (2%)
Strand = Plus / Minus
Query: 1 aaattagagtcatttgaattagaattagattttaaaaatatgaaaaatttgttgccaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aaattagagtcatttgaattagaattagattttaaaaatatgaaaaatttgttgccaagt 581
Query: 61 agatccaaaaagtacctctgtactgagaggcatcaaccacaatcaactgaaccatttgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agatccaaaaagtacctctgtactgagaggcatcaaccacaatcaactgaaccatttgtc 521
Query: 121 aataaatccatggagaaggcccaatgaatattaaaagtgagatgtcttgattggtgagct 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 520 aataaatccatggagaaggcccaatgaatattaaaagtgaggtgtcttgattggtgagct 461
Query: 181 gatttcttcttgttggaaaccattatcttcattgccatattctgttctacagagtggccc 240
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gatttcttctcgttgaaaaccattatcttcattgccatattctgttctacagagtggccc 401
Query: 241 agggctgggaagg-aaaatcagcatcactaggcaatgaagaatgaacaatttgctctact 299
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 400 agggctgggaaggaaaaatcagcatcactaggcaatgaagaataaacaatttgctctact 341
Query: 300 ttaaaaaaaaataatgtgtttgttcatttcttaaggattttatatgtgatgcaacatatt 359
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 340 t--aaaaaaaataatgtgtttgttcatttcttaaggattttatatgtgatgcaacat-gt 284
Query: 360 ttgatcatatttactatcacgccttctaactcctcccagattcaccatcctttctgctat 419
|||||||||||||||| ||| |||||||||||||||||||||||||||| | ||||||||
Sbjct: 283 ttgatcatatttactaccacaccttctaactcctcccagattcaccatcgtctctgctat 224
Query: 420 tgcctcccaaactttc---tttttttcctttttttctctctctccttctccttttctctc 476
|||||||||||||||| ||||||||| |||||||||||||| || |||| ||||
Sbjct: 223 tgcctcccaaactttcttttttttttcc--tttttctctctctc--tc-cctt---tctc 172
Query: 477 tctccctctctccctccctcccttccatcctttcctctttcttctttcttatactgcact 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tctccctctctccctccctcccttccatcctttcctctttcttctttcttatactgcact 112
Query: 537 gagt 540
||||
Sbjct: 111 gagt 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 938
Length adjustment: 10
Effective length of query: 530
Effective length of database: 928
Effective search space: 491840
Effective search space used: 491840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
