XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCC
AGGTTTATTACCACCATGAAATGCTGTCAATGCCTAAGAGACACCAAGAC
GTATAGTTTCTTGTCATGAGAACAGGCTCAGGAAACCTCACTGCACCCAA
ATCAAACTTCAACTCCACTCTCCAGGTTTCTCTATTTCAGACAAACTTGA
AGTTTGGTTACAAAAGTTGTGATGCTCTCTCTCTGGAAGTGTTGCCTGAC
ATGTCCTGTCTTCTGACTTTGTTTTAAATTACACTCATCACTTGCTCTGG
GCTGACTGAGAGAGCAGGTAGACTCTGTCAACCTTGAGTGCAGCCTAGCA
CACAAAGCAACTCCTGCAGCATCTTCACTCAGGCAGATGCTACCTGGGAA
ATGGAAGAAGAGCGAACTGGTGATTTAATTAACCCTCGGAGTCTCTGAAA
TGTAAACGTTTTCTCTGTAAAGCTCAGGGGCCCTCTCTTGTGTCCAAACC
AGCAGGTCTCTATTTCTGCCTCTCCTTCTGTTTCTGTGCTCTTGAACCCT
CTGTAATACATTGTTAGATGACTTTGTTTGCACAGAGGGATACCCCTCCC
CCCAATTCTGGAGGTGTTAGAAATTTTGTCCCTTTATATATTTTTCCCCG
GGCTGTACTCTATTCTCTAATGCTGGCTACATCTTTTCCACCATCACTTA
ACACTGGGAAGCGTATCATTTCTCGGCCCCTCTTTTTTACATAAAACACC
TCCTTTT

ATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACAGTGAGCCCCCATGCAAGCTGCACATGAG
GTCCGCAATGTTTTGTTTCACTTGCTTTGCTCCTCTCTCACGCTCTCGGG
CTCTCAGTTTCTCCATCTCCCTGCTACATGCAGACATGAGCACCAGTACG
TCAATGAGTTCAAAGAACACAACTGTTCATTTGTATGAACTCACTGCATT
GATCAAAGTCAAGACATACGAATGGACTGGATATGGCAATTCCAATATCT
TGTTTGCATACCTCTCTCAAATATTTACAACTCTGTGTGTGTGTGTGTGT
GTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTTTTTTTTTTTT
TGNTTTTATTCACANGTTTTTAATTATGATGCTCCATGTTTTTTTTTATC
CACCTTTTTATCGCTCGTCCCTCTTCCCCTCTTTTTCACCCTTTCATTTA
TTCCACAGTCCCTTTTTTTTTCTTTTTTCCTCTTCATTTTTATTTTTTCT
TTTCTTTTTCTTTATTTTTTCTTACTTCTCCTATCTTCCACTTTTTCTTC
CTTCTTCCAATTAATCTTTATACCGTTCTTACTACTCCAATTTTCATCCT
TCATTTAATATCTTACTTCATCATTTTTATCCCGCTATTTTTTTTTTTCT
CCAATTTACTATACTATTTATCACTTTTTCTATCTCTACTTTCTTCTTCC
CCTCTTTTTCCATTCTCTCCTTTT

Query= MSMg01no425_j06.b1 MSMg01no425_j06.b1 CHROMAT_FILE:
MSMg01no425_j06.b1 PHD_FILE: MSMg01no425_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:50 2005
         (468 letters)



>mm_chr2_106771879_106772745
          Length = 867

 Score =  804 bits (416), Expect = 0.0
 Identities = 455/468 (97%), Gaps = 1/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatgaaatgctgtcaatgcctaagagacaccaagacgtatagtttcttgtcatgagaac 60
           ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 667 ccatgaaatgctgtcaatgcctatgagacaccaagatgtatagtttcttgtcatgagaac 608

                                                                       
Query: 61  aggctcaggaaacctcactgcacccaaatcaaacttcaactccactctccaggtttctct 120
           |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 607 aggcccaggaaacctcactgcacccaaatcaaacttc-actccactctccaggtttctct 549

                                                                       
Query: 121 atttcagacaaacttgaagtttggttacaaaagttgtgatgctctctctctggaagtgtt 180
            |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 548 gtttcagacaaacttgaagtttggtcacaaaagttgtgatgctctctctctagaagtgtt 489

                                                                       
Query: 181 gcctgacatgtcctgtcttctgactttgttttaaattacactcatcacttgctctgggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gcctgacatgtcctgtcttctgactttgttttaaattacactcatcacttgctctgggct 429

                                                                       
Query: 241 gactgagagagcaggtagactctgtcaaccttgagtgcagcctagcacacaaagcaactc 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gactgagagagcagggagactctgtcaaccttgagtgcagcctagcacacaaagcaactc 369

                                                                       
Query: 301 ctgcagcatcttcactcaggcagatgctacctgggaaatggaagaagagcgaactggtga 360
           |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 368 ctgcagcatcttcactcaggcagatgctacctgggaaatggaagaacagcaaactggtga 309

                                                                       
Query: 361 tttaattaaccctcggagtctctgaaatgtaaacgttttctctgtaaagctcaggggccc 420
           |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 308 tttaattaaccctcggagtctctgaagtgtaaacattttctctgtaaagctcaggggccc 249

                                                           
Query: 421 tctcttgtgtccaaaccagcaggtctctatttctgcctctccttctgt 468
           |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 248 tctcttgtgtccaaaccagcaggtctctctttctgcctctccttctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 867
Length adjustment: 10
Effective length of query: 458
Effective length of database: 857
Effective search space:   392506
Effective search space used:   392506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no425_j06.g1 MSMg01no425_j06.g1 CHROMAT_FILE:
MSMg01no425_j06.g1 PHD_FILE: MSMg01no425_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:50 2005
         (310 letters)



>mm_chr2_106597101_106597810
          Length = 710

 Score =  522 bits (270), Expect = e-153
 Identities = 300/310 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagtgagcccccatgcaagctgcacatgaggtccgcaatgttttgtttcacttgcttt 60
           |||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 cacaatgagcccccatgcatgctgcacatgaggtccacaatgttttgtttcacttgcttt 260

                                                                       
Query: 61  gctcctctctcacgctctcgggctctcagtttctccatctccctgctacatgcagacatg 120
           |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcctctatcatgctctcgggctctcagtttctccatctccctgctacatgcagacatg 320

                                                                       
Query: 121 agcaccagtacgtcaatgagttcaaagaacacaactgttcatttgtatgaactcactgca 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaccagtaggtcaatgagttcaaagaacacaactgttcatttgtatgaactcactgca 380

                                                                       
Query: 181 ttgatcaaagtcaagacatacgaatggactggatatggcaattccaatatcttgtttgca 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatcaaagtcaagaaatacgaatggactggatatggcaattccaatatcttgtttgca 440

                                                                       
Query: 241 tacctctctcaaatatttacaactctgtgtgtgtgtgtgtgtgtgtgtgtgagagagaga 300
           |||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct: 441 tacctctctcaaatatttacaactctctctgtgtgtgtgtgtgtgtgtgagagagagaga 500

                     
Query: 301 gagagagaga 310
           ||||||||||
Sbjct: 501 gagagagaga 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)