BAC Information

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BAC

Clone NameMSMg01-425O24
Chromosome2 (Build37)
Map Location 164,182,438 - 164,182,856
singlet/doubletsinglet
Overlap geneSlpi
Upstream geneJph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5
Downstream geneMatn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425O24.T7 (MSMg01no425_o24.b1)MSMg01-425O24.TJ (MSMg01no425_o24.g1)
ACCAG519500AG519501
length766755
length of high quality
(start - end)		432 (38 - 469)421 (67 - 487)
definitionCHROMAT_FILE: MSMg01no425_o24.b1 PHD_FILE: MSMg01no425_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:17 2005CHROMAT_FILE: MSMg01no425_o24.g1 PHD_FILE: MSMg01no425_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
CCTGATTACTACCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATC
CTTAATCATCAGAGAAATGCAAATCAAAACAACCATGATATTCCACCTCA
CACCAGTTAGAATGGCTGAGATCAAAAATTTAGGTGACAGCAGATGCTGG
CAAGGATGTGGAGAAAGAGGAACACTACTCCATTGTTGGTGGGATTGCAA
GCTTGTACAACCACTCTGGAAATTAGTCTGGCGGTTCCTCAGAAAATTGG
ACATAGTACTACCGGAGGATCCCGCAATACCTTCCTGGGCATATATCCAG
AAGTTGTTCCAACTGGTAAGAAAGACACATCCTCCACTATGTTCATAGCA
GCCTTATTTATAATAGCCAGAATCTGGAAAGAACCCAGATGCCTCTCAAC
ACAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACT
CAGCTATTAAAAAGAATGAATTTATGAAATTCCTACGCAAATGGATGTAC
CTGGAGGGCCTCATCCTTGATGAGGTGACCCCCTCCCAAAGGACCTCCCT
GAAATGGACCCCCCGGAAAGGGGATATATCCCCCAAACTTATAATACCGG
AAATGTTTGTGAGAAAATTAAGAATGGTTTCATTTTTTTTTTGAAAAAGG
GATGGTTTTAACATTAACCCCACCCCCGATTAACTTTTTTCCCGCCACCT
GGTCAGAAATTTTCCG

GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTAACAAGTCAAAGGACACCACAGCTCCACGC
TGATTGCAGCGATGAGTAAGAGGCCCTGTCTCTTTCCTCCAGTCCGCTTC
AGTGATCTCTATTAGCCATTGATGCAATTCATTCATTACTTTAAGGGTCA
TTTTAAGCCCTTAATCTTAAAACCAGTCCCAAGTTGTTTCACGACTAAGA
GACTGAGCTCCAACAAGGTTGGCTGAAGGCAAGGCCCTTCTGTGTGTAAC
TTTCATTTGTTTAGGGATTGCTTTCCAGGTTCCAGTCATGGAATGGGCAC
CGGGCAAACAGCGGTGCAAATGATTTGGCAGAAATCAACATCAGTTGGTT
GAGCCATGCGTCATCTTCATCTCGAGAAGGAATTTGTATTGAGCAATAGG
TTAGAGTTTCAAAATCCCAGAAAGTCCAGGAACATANNAAAAAAAAATAG
AGGTGTATGGCAGAGTTTCAGCTGAGAGTCCACGTGTGATGTCTCAGCTT
CAGGTTAGGGAAACCTTTTTGTGACTGGTTCTTCTCCACTAATGGGAGGA
ATATCCTTGGGATTCACAAGGTCAGGGGTCAAGGGAACCTTTGAAGGGCC
TCCTGTGAAAAATTCCCAAAAAGTTCGGGTTTTTTTACCCCCCCAGGGGT
ACTCTGAGGGCCCCGGGCCCCGCTGAAAAAAAAAATTGCCCCCCATTCTT
TATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_o24.g1 MSMg01no425_o24.g1 CHROMAT_FILE:
MSMg01no425_o24.g1 PHD_FILE: MSMg01no425_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:17 2005
         (421 letters)



>mm_chr2_164182238_164183058
          Length = 821

 Score =  803 bits (415), Expect = 0.0
 Identities = 418/419 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttaacaagtcaaaggacaccacagctccacgctgattgcagcgatgagtaagaggccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctttaacaagtcaaaggacaccacagctccacgctgattgcagcgatgagtaagaggccc 560

                                                                       
Query: 61  tgtctctttcctccagtccgcttcagtgatctctattagccattgatgcaattcattcat 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgtctctttcctccagtccgcatcagtgatctctattagccattgatgcaattcattcat 500

                                                                       
Query: 121 tactttaagggtcattttaagcccttaatcttaaaaccagtcccaagttgtttcacgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tactttaagggtcattttaagcccttaatcttaaaaccagtcccaagttgtttcacgact 440

                                                                       
Query: 181 aagagactgagctccaacaaggttggctgaaggcaaggcccttctgtgtgtaactttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aagagactgagctccaacaaggttggctgaaggcaaggcccttctgtgtgtaactttcat 380

                                                                       
Query: 241 ttgtttagggattgctttccaggttccagtcatggaatgggcaccgggcaaacagcggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttgtttagggattgctttccaggttccagtcatggaatgggcaccgggcaaacagcggtg 320

                                                                       
Query: 301 caaatgatttggcagaaatcaacatcagttggttgagccatgcgtcatcttcatctcgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 caaatgatttggcagaaatcaacatcagttggttgagccatgcgtcatcttcatctcgag 260

                                                                      
Query: 361 aaggaatttgtattgagcaataggttagagtttcaaaatcccagaaagtccaggaacat 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaggaatttgtattgagcaataggttagagtttcaaaatcccagaaagtccaggaacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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