BAC Information

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BAC

Clone NameMSMg01-426D02
Chromosome2 (Build37)
Map Location 20,375,721 - 20,376,111
singlet/doubletsinglet
Overlap geneEtl4
Upstream gene4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426D02.T7 (MSMg01no426_d02.b1)MSMg01-426D02.TJ (MSMg01no426_d02.g1)
ACCAG519692AG519693
length800865
length of high quality
(start - end)
400 (38 - 437)41 (70 - 110)
definitionCHROMAT_FILE: MSMg01no426_d02.b1 PHD_FILE: MSMg01no426_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:38 2005CHROMAT_FILE: MSMg01no426_d02.g1 PHD_FILE: MSMg01no426_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCCGCGGAATTCTT
TGTAATCTTGCTCTGGTTATAATGAGCCGCTTAAACATAAACTTCTGCAT
CTCTATAAGTTCTATATGTGTACATATATATGCGTTTGTTTATGTTACTG
TAGTCCTAAAATCAACTTGGATTAAAACAAGTTAGATATAATGGATAAAG
CTTTAACTGTAGAATGGAGAACCATGGGAACAGAATGGGTTTTCATTTCT
TCAAGTATTTATTGCTACGTGTTTCTAGAAAAAGAAGGAATGAGATTCCA
GATACAAGTGACCACAAATGCCTTTGCTTCCTCCAAAAGAATAAACGAAC
CCCTTCCTGGCTGCTGTTTCAGCTGTTGGTGAATCCTAGGGGGTAGGAAT
TTGGAACTCTCATGCTAGATAAAGGGAAGTTAGTTAGTTAGGAAGAAGAC
AGCTGTAGCCAATCTACCCAATTGAGCCAGACAGCCCCACAGGCAGACTT
CATGGTACAAAGTATAAACGACCCTGGAGGACCATGCTGACTTATGTTTA
ACAGTTCTCGAGCCAACAGTACACCTTGAAGTCTTTTCACCTTTGTATTT
ATGCCCCCTTGGCTCTCCTTCAAAATGTCCTGCCACACTTTCCTAATAAC
TTTGTCTCCTCCTTCCTTTCCCCCTTTTTTTCCCTAACTCCCCCATTTCT
CCTCCACTCTTTCAATACCTTCCTCTTCCTCAATATCTTCCTTCCATCCT
CTCCCTTTTCCTCCCTTCCTTCTCTCCCAACCTTCTCCCTCATCTTTCCN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGGCCAAAAAGGGGTAGTGGGTGGGCAGG
GGAGTGGGGGTGNTTTTTTTCCCCTTTCTTTTTTTTTTCTTCGCCGCGTT
TTTTTTCTCTCCCCCCTTCCCGTTTCCTTTTCTTCGCCGTTTTCGTTCCC
GCTCTCTTCCTTTCGTTCCTTCTTCCGCCTTCATTTTTCTCCCCCTCTTT
CTCTTTTTTTTTCTTTTTTTTCTCCTCTCTCACTCCCCCTTCTCTGTTCT
CTTTTTCCTTCCTTTTCCCTTCTCTTTCTCCCTCTTTTTTTTTTCTCTCT
TCTTTTTTTTTTTTTTTCCACTCCTTTTCCTTCCTCTTTTTCTCTTTTCT
TCCCTCTCCTTTTTTCTTCCTTTCCTCTCTCTCTTTCCCCCCCTCTCCTT
TCCCTTTCTCTTCCCTCCTTTCCCCCCCTTTTCCTCCTCTTTTTTTTTTT
TTTCTCCTTCTTCTCTTTTCTTCTTCTCCTTTCTCCTCCTTTTTTTTCTT
TCTCCCTCCTCTTCTTTTCTTTCCTCTTCCTTCTTTCTCCTTTTTTTCTT
CCTCCCTTTCCCCCCCTTTTCTTCTTTCCTCCTCTCTTCTCTCCCTTCTC
TTTTCTCTTTTCCCCTTTTTCTCTTCCCTTCTTTCTTTTCTCTTTTCCCT
CCTCTCTCTCCCTTTTTTTTTCTTCTCTTTTCTCTCTCTCTTTCTTTCTC
TTCTTTTTTTTTTCGCTCCCTTCTTTTTTCTCCTCCCTCTCCTTTTCTTC
TTTCTCCCTTTCTTCCCTCTTCTCCTTTCCCTCTTTCCTCCTTTTTCTCC
TCCCTCTTACCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_d02.b1 MSMg01no426_d02.b1 CHROMAT_FILE:
MSMg01no426_d02.b1 PHD_FILE: MSMg01no426_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:38 2005
         (400 letters)



>mm_chr2_20375516_20376315
          Length = 800

 Score =  656 bits (339), Expect = 0.0
 Identities = 378/391 (96%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctttgtaatcttgctctggttataatgagccgcttaaacataaacttctgcatct 65
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gaattctttgtaatcttggtctggttataatgagccgcttaaacataaacttctgcatct 537

                                                                       
Query: 66  ctataagttctatatgtgtacatatatatgcgtttgtttatgttactgtagtcctaaaat 125
           |||||| | ||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 536 ctataaatgctatatgtgtacatatatatgtgtttgtttatgttactttagtcctaaaat 477

                                                                       
Query: 126 caacttggattaaaacaagttagatataatggataaagctttaactgtagaatggagaac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 caacttggattaaaacaagttagatataatggataaagctttaactgtagaatggagaac 417

                                                                       
Query: 186 catgggaacagaatgggttttcatttcttcaagtatttattgctacgtgtttctagaaaa 245
           ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 416 catgggaacagaatgtgttttcatttcttcaagtatttggtgctacgtgtttctagaaaa 357

                                                                       
Query: 246 agaaggaatgagattccagatacaagtgaccacaaatgcctttgcttcctccaaaagaat 305
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 356 agaaggaatgagattccagatacaagtgaccacaaatgcccttgcttcctccaaaagaat 297

                                                                       
Query: 306 aaacgaaccccttcctggctgctgtttcagctgttggtgaatcctagggggtaggaattt 365
           ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aaatgaacctcttcctggctgctgtttcagctgttggtgaatcctagggggtaggaattt 237

                                          
Query: 366 ggaactctcatgctagataaagggaagttag 396
           |||||||| ||||| ||||||||||||||||
Sbjct: 236 ggaactcttatgctggataaagggaagttag 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)