Query= MSMg01no426_i05.b1 MSMg01no426_i05.b1 CHROMAT_FILE:
MSMg01no426_i05.b1 PHD_FILE: MSMg01no426_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:05 2005
(312 letters)
>mm_chr2_116287145_116287856
Length = 712
Score = 588 bits (304), Expect = e-172
Identities = 310/312 (99%)
Strand = Plus / Minus
Query: 1 tccaagatggcagtaatgagcaggacagagaaacttaataaaaatccaaatcgtttattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tccaagatggcagtaatgagcaggacagagaaacttaataaaaatccaaatcgtttattt 453
Query: 61 tggggggcattgttcacagagaactatgagaagtttcttagttgctgactcctctttcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tggggggcattgttcacagagaactatgagaagtttcttagttgctgactcctctttcaa 393
Query: 121 gagtctatgcatgataattgagggttctcttatctcttatctgtgaccttagggtaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gagtctatgcatgataattgagggttctcttatctcttatctgtgaccttagggtaataa 333
Query: 181 taaataaaacttcccagcacatttcttccatttgtttatgtgtaccaacatttggatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 332 taaataaaacttcccagcacatttcttccatttgtttatgtgtaccaacgtttggatttt 273
Query: 241 tttttaacatggcagtcttgtctctgtcatcattttggggtctcttcagtgatattccct 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tttttaacatggcagtcttgcctctgtcatcattttggggtctcttcagtgatattccct 213
Query: 301 aaaacacacatc 312
||||||||||||
Sbjct: 212 aaaacacacatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_i05.g1 MSMg01no426_i05.g1 CHROMAT_FILE:
MSMg01no426_i05.g1 PHD_FILE: MSMg01no426_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:05 2005
(533 letters)
>mm_chr2_116112521_116113450
Length = 930
Score = 955 bits (494), Expect = 0.0
Identities = 522/533 (97%), Gaps = 3/533 (0%)
Strand = Plus / Plus
Query: 1 catgttgagagagaaagatgtggaatagttgctattttctaatccttaccaacacgaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgttgagagagaaagatgtggaatagttgctattttctaatccttaccaacacgaagc 260
Query: 61 aattttcttctatgactcagtccagaatgtagaagtcttccttatttttgataaccttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattttcttctatgactcagtccagaatgtagaagtcttccttatttttgataaccttga 320
Query: 121 cagcttttccagacatcattttcagaaatgaatatataataccctttatcaagccccaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcttttccagacatcattttcagaaatgaatatataataccctttatcaagccccaac 380
Query: 181 tccttatgtaatatcaaagaatatcagcgtgtaatctataaaagatatttttgcaactgg 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttatgtaacatcaaagaatatcagcgtgtaatctataaaagatatttttgcaactgg 440
Query: 241 tacaaagaagagatcaagttacttgctgttccctttgtaagcagcattttttttttttgt 300
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 441 tgcaaagaagagatcaagttacttgctgttccctttgtaagcaacattttttttt---gt 497
Query: 301 ctttagactatgatggtgaagtgtcttgagaaatgacctcatgagatgggattggtaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctttagactatgatggtgaagtgtcttgagaaatgacctcatgagatgggattggtaaag 557
Query: 361 agtcctgccctctaggctcacatttccagaagcaatgaagagaggcgtttgcttttcatt 420
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 558 agtcctgccctctaggctcacatttccagaagcaatgaaaagagacgtttgcttttcatt 617
Query: 421 tagcatttaatgccttgcagggcattanatgatatgaagcatgatttccatctctcttat 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 618 tagcatttaatgccttgcagggcattaaatgatatgaagcatgatttccatctctcttat 677
Query: 481 ttttaaaataagtttctctatttatgtggatatacgttgtgtgtgtgtgtgtg 533
|||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 678 ttttaaaataagtttctctatttatgtggatatatgtcgtgtgtgtgtgtgtg 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 930
Length adjustment: 10
Effective length of query: 523
Effective length of database: 920
Effective search space: 481160
Effective search space used: 481160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
