BAC Information

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BAC

Clone NameMSMg01-426K17
Chromosome2 (Build37)
Map Location 174,453,365 - 174,652,491
singlet/doubletdoublet
Overlap geneLOC100043757, Edn3
Upstream geneRab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967
Downstream geneLOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426K17.T7 (MSMg01no426_k17.b1)MSMg01-426K17.TJ (MSMg01no426_k17.g1)
ACCAG520054AG520055
length757757
length of high quality
(start - end)		432 (68 - 499)495 (73 - 567)
definitionCHROMAT_FILE: MSMg01no426_k17.b1 PHD_FILE: MSMg01no426_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:17 2005CHROMAT_FILE: MSMg01no426_k17.g1 PHD_FILE: MSMg01no426_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,652,060 - 174,652,491)(174,453,365 - 174,453,859)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCATGTTTCCGCCCTCATCCCTGGTGATTGTGTCTTCCTCATTT
TCACAGGAGTTGCTTCTGAAGGCACTTCCAGTCTTGTGTCTGGGTTCGAA
ACACCAGTGCAGAGTCTATTGCCCAGGGAAACTGTTGTGGACACAAGCTG
TCTCTAATTCATCTGTCAATTCAGTGTCTAATTGCCCACAGCTCATCCCA
TCCAACCCTCTTTACTGACAGCCTTCCATTTATCCACCTGGCTATGTCCA
TCCGTCAGCCCCTCTAACTACCCTTTATCCAAATAACTGTTCAATTATCC
TGATAACAAGCACTTTATCTGTACTTAACTATGCATATATCATTTATCAG
TTTTACCAACTGACCACCCACTTTTTTGTTTTGCCTTTTACCCATCCTTC
CACACACTCATGTGTGCACCCACCCACACATCCTTTCAACACTCGCCCGC
CCACCCACCCACANCCATCTGGGCAACTGTCCACACATGAACCATATAAT
CATCCCACAGCCACTACAAACTGTGAAATTTGCCCCAGAAGGATCAAACG
TTGCTTTTTGAATTTGTGGCCAAAAAAACCTAGCCCTTTTAAGTTTTTTT
TTCTTATAACAACTTATAAACTTTTTTTTGCCCGGTTTGGGCCACTTTTT
TAAAAACAAAAAAAAAAATTCTTAATCTGCAAGGGTTTTCATACATAAAA
GTAAAAN

AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTACCGTGACAGTCTGGACCCATCGAGTT
TCTTTCCACTGTGGACTTGGTTAGGTCACGAAACACCCGAGATGAGGAGA
GAGGTCCTTTGGGAACATCTGTGAGGGTATTTCTAGAGAGGGTAAGCTGA
GGGTAGAAAACAAGACTGCCCCGGATGTGGGGATAACTGTCCTCTGGGCT
GGGGTCCCAGAAGCAGAAGACCTTGTCCTTGTCCAATGTGACCTCCTCTG
ACAGTGCAAACATCAGGCATACCCACCAATGGAGTTATATTGGACGATGA
AAAGGAGAAGGCCACTGAAGCACACTACGGTGTGGGAGAGTCTCAACAGC
GTTGTCTCCAACACCAAGACACAGGGTTGAACATGCTACTCTGCCCATGC
TTCCATTTCATGATAGTCTAGAAGAGGCAAACTCTGAGCCTAGAAACAGA
TCTTTGGCTACCAGATTTTCTGTGGTGGAAGGAAGAGGCTTACCACAGCA
TGATCTGGGGAGCCTTGGGAATGTTCCACTTTGAGTTCATTATGTCCATG
GATACTCTTACTGTATCTGCTTCTCAAAATGTATAGAAATGTATCCTAGG
GAAGATGTATACTCTTGAACACACTCCCACCCTCTCTCTTTCTATCCACC
TAACTATGTGTACATATATATATGGGGGTGGGCGCGGTTTTCGCCTTTTT
TCCGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_k17.b1 MSMg01no426_k17.b1 CHROMAT_FILE:
MSMg01no426_k17.b1 PHD_FILE: MSMg01no426_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:17 2005
         (432 letters)



>mm_chr2_174651860_174652691
          Length = 832

 Score =  781 bits (404), Expect = 0.0
 Identities = 425/432 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctcatccctggtgattgtgtcttcctcattttcacaggagttgcttctgaaggcactt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ccctcatccctggtgattgcgtcttcctcattttcacaggagttgcttctgaaggcactt 573

                                                                       
Query: 61  ccagtcttgtgtctgggttcgaaacaccagtgcagagtctattgcccagggaaactgttg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 572 ccagtcttgtgtctgggttcgaaacaccagtgcagagtctactgcccagggaaactgttg 513

                                                                       
Query: 121 tggacacaagctgtctctaattcatctgtcaattcagtgtctaattgcccacagctcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tggacacaagctgtctctaattcatctgtcaattcagtgtctaattgcccacagctcatc 453

                                                                       
Query: 181 ccatccaaccctctttactgacagccttccatttatccacctggctatgtccatccgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ccatccaaccctctttactgacagccttccatttatccacctggctatgtccatccgtca 393

                                                                       
Query: 241 gcccctctaactaccctttatccaaataactgttcaattatcctgataacaagcacttta 300
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gcccctctaactacccggcatccaaataactgttcaattatcctgataacaagcacttta 333

                                                                       
Query: 301 tctgtacttaactatgcatatatcatttatcagttttaccaactgaccacccactttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tctgtacttaactatgcatatatcatttatcagttttaccaactgaccacccactttttt 273

                                                                       
Query: 361 gttttgccttttacccatccttccacacactcatgtgtgcacccacccacacatcctttc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 272 gttttgccttttacccatccttccacacactcatgtgtgcacccacccacacatccttcc 213

                       
Query: 421 aacactcgcccg 432
           ||||||| ||||
Sbjct: 212 aacactcacccg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_k17.g1 MSMg01no426_k17.g1 CHROMAT_FILE:
MSMg01no426_k17.g1 PHD_FILE: MSMg01no426_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:18 2005
         (495 letters)



>mm_chr2_174453165_174454059
          Length = 895

 Score =  919 bits (475), Expect = 0.0
 Identities = 490/495 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taccgtgacagtctggacccatcgagtttctttccactgtggacttggttaggtcacgaa 60
           ||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 201 taccgtgacagtctggatccattgagtttctttccactgtggacttggttagatcacgaa 260

                                                                       
Query: 61  acacccgagatgaggagagaggtcctttgggaacatctgtgagggtatttctagagaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacccgagatgaggagagaggtcctttgggaacatctgtgagggtatttctagagaggg 320

                                                                       
Query: 121 taagctgagggtagaaaacaagactgccccggatgtggggataactgtcctctgggctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagctgagggtagaaaacaagactgccccggatgtggggataactgtcctctgggctgg 380

                                                                       
Query: 181 ggtcccagaagcagaagaccttgtccttgtccaatgtgacctcctctgacagtgcaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcccagaagcagaagaccttgtccttgtccaatgtgacctcctctgacagtgcaaaca 440

                                                                       
Query: 241 tcaggcatacccaccaatggagttatattggacgatgaaaaggagaaggccactgaagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaggcatacccaccaatggagttatattggacgatgaaaaggagaaggccactgaagca 500

                                                                       
Query: 301 cactacggtgtgggagagtctcaacagcgttgtctccaacaccaagacacagggttgaac 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 cactacggtgtgggagagtctcaacagcgttgtctccaacaccaagacacagagttgaac 560

                                                                       
Query: 361 atgctactctgcccatgcttccatttcatgatagtctagaagaggcaaactctgagccta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgctactctgcccatgcttccatttcatgatagtctagaagaggcaaactctgagccta 620

                                                                       
Query: 421 gaaacagatctttggctaccagattttctgtggtggaaggaagaggcttaccacagcatg 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 gaaacagatctttggctaccagattttctgtggtgggaggaagaggcttaccacagcatg 680

                          
Query: 481 atctggggagccttg 495
           |||||||||||||||
Sbjct: 681 atctggggagccttg 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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