BAC Information

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BAC

Clone NameMSMg01-426K24
Chromosome2 (Build37)
Map Location 78,524,316 - 78,524,681
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703, LOC383717, LOC100040476
Downstream geneLOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1, Ssfa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426K24.T7 (MSMg01no426_k24.b1)MSMg01-426K24.TJ (MSMg01no426_k24.g1)
ACCAG520068AG520069
length825776
length of high quality
(start - end)		368 (73 - 440)386 (76 - 461)
definitionCHROMAT_FILE: MSMg01no426_k24.b1 PHD_FILE: MSMg01no426_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:19 2005CHROMAT_FILE: MSMg01no426_k24.g1 PHD_FILE: MSMg01no426_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTGCTGTTACATCTTCAGGGGCATTGATTGCAGGCCACTTACT
TGGCAAGCTATCATTGACTCAGTCAATGCCTGATTTTATTGTAAGATTTT
GTAGAAACATCATCACAGTATCCTAGGGTAGGAATCACCAAAAAATGGTA
GGTGAATTAGAATGAACCTTGCACATATAGATTGAAAGTGCGAGCTCTAG
GCTCAGGAGAACGGTCAATACAGGAAATGAGGTTGAGGGGAGAAGAGAAG
ATGTGAAGTCTGGTGCATCTGAAGAGCTCAGGGACATTGTCTCTAAAATT
AAACAGATTTTGACATAATTGTAGTGGCATGTGTGGTTTTAAGCAACAAT
ATAAATAAATCCCTTCTAGTGGATACTTTGCTTGTTTTTGTTTTTTTTTG
GTGCTGTTGCTTTTTTTCTCCTACATGTTTCTCTTCTACTTCTCCTCTTT
TCTTTTCTTACTTTTCTTTCTCCTTTTTCCTCTTCTTTCTTTTTCTTTCC
TAAACATATTTTCTTATCTTCCCTTTTCCTTCTTTTTTGTTTATTCATTC
CTTTTCGTCTTTCTTTTCATTATCTTGTTTTCTTTTGTTTTTCGTTCTTT
GTTTATTTTTTCCCTTTTTTCTCTTGTTTGACCTCCCTTCTATCTACTAT
TCCAATTCCCTCCTCACACTTTTGTCTTATATTCCACTATCAAGTATCTA
GCCCTTCCCCTTTCTATTTCCTCCTCTTCCTTCTTGTCTTTATTATTCCG
TTATCCATCTTCCAACCCCATCTTT

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTACATTTAGGTTGCACTAAGTCT
TTACAAGATAGTGCCTTTTTATAGTCACAGAATTACTCATTTAAGTATCA
GCCACATTTCAAAGGGTAGTAGCCGCATAGGGTTAGACATTGACCTAACA
GACAGCATAACTCTATAGGTCTTCTGAATTCACTTAGCTTCTGACCCGGG
TCTTCCATTTATTTCTTGCCTATAACATATTTGTTTCTCTCTCTCCTTCC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCCTTTTAGGTCTTAAGGCAGGGTTTCACTGACT
ATCCCAGACTACCCTCAAACTTATAACCTTCCTGCTTCTGCCCCTTGAGT
GCTGAAACTGCATGTGTGTGTGTCACTAGCCCCCTGTTATTTTTTGGCTA
TTTAAAATCGCCCCGGCCGTTAAATCTTGTTCCCCGGATGTTGTTTTACT
TTTTAGTTTCAGGTGTGGCGNCTCAAGGTCTCTTATCTTGGTTGATCTTT
TTTTTCTTGTGGGTTTCTCCCTCACATTTTCTTCCTTTGTTTTAAGTCAC
TCTGTTACTCTTCTTTTCTACCACCTTATCCTTACGTTTCCCTTTCTCCC
TCTTCTTTCTTGTTTACTCGCGTCCTCTCATCTTCCTTCTTTGCTTCCTT
TTTCATTCCCTTTTTACTATTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_k24.b1 MSMg01no426_k24.b1 CHROMAT_FILE:
MSMg01no426_k24.b1 PHD_FILE: MSMg01no426_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:19 2005
         (368 letters)



>mm_chr2_78524116_78524882
          Length = 767

 Score =  656 bits (339), Expect = 0.0
 Identities = 360/367 (98%), Gaps = 1/367 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggggcattgattgcaggccacttacttggcaagctatcattgactcagtcaatgcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 caggggcattgattgcaggccacttacttggcaagctatcattgactcagtcaatgcctg 507

                                                                       
Query: 61  attttattgtaagattttgtagaaacatcatcacagtatcctagggtaggaatcaccaaa 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 506 attctattgtaagattttgtagaaacatcatcacagtatcctagggtaggaatcacc-aa 448

                                                                       
Query: 121 aaatggtaggtgaattagaatgaaccttgcacatatagattgaaagtgcgagctctaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 447 aaatggtaggtgaattagaatgaaccttgcacatatagattgaaagtgccagctctaggc 388

                                                                       
Query: 181 tcaggagaacggtcaatacaggaaatgaggttgaggggagaagagaagatgtgaagtctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcaggagaacggtcaatacaggaaatgaggttgaggggagaagagaagatgtgaagtctg 328

                                                                       
Query: 241 gtgcatctgaagagctcagggacattgtctctaaaattaaacagattttgacataattgt 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 327 gtgcatctgaagagctcagggacattgtctctaaaattaaaccgattttgacataattgt 268

                                                                       
Query: 301 agtggcatgtgtggttttaagcaacaatataaataaatcccttctagtggatactttgct 360
           |||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 267 agtggcatgtgtagttttaagcaacaatataaataaatcccttctagtgtacactttgct 208

                  
Query: 361 tgttttt 367
           |||||||
Sbjct: 207 tgttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 767
Length adjustment: 9
Effective length of query: 359
Effective length of database: 758
Effective search space:   272122
Effective search space used:   272122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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