BAC Information

Click to search

BAC

Clone NameMSMg01-426N01
Chromosome2 (Build37)
Map Location 35,556,159 - 35,556,684
singlet/doubletsinglet
Overlap geneDab2ip
Upstream geneGapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194
Downstream geneTtll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426N01.T7 (MSMg01no426_n01.b1)MSMg01-426N01.TJ (MSMg01no426_n01.g1)
ACCAG520163AG520164
length793777
length of high quality
(start - end)
316 (67 - 382)526 (68 - 593)
definitionCHROMAT_FILE: MSMg01no426_n01.b1 PHD_FILE: MSMg01no426_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:29 2005CHROMAT_FILE: MSMg01no426_n01.g1 PHD_FILE: MSMg01no426_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAGAGGATCCGCGGAATT
CACCAGAGTTTACCGAGAAAGAAGTAAGAAAATCAGATATAATAGAATAG
GTATGCACATCAAGGCCAGTTGAAAAGAAGTCATGCACAAATGAAATCTA
TACAGCCGTTGTCCAGGGCTAAGTTTAGGAGAACTGGGAACAATTGTTTT
TTACAAAGAGCTGTTGCAGGCTACTGAGATGTCTCCATCCCAGCCTACTG
AAGGCAGTCCCTGTCATTGGATGCTGTCTCCAGCAGGGGAGGGCCCATCT
CAGTTTGGATTTTGTCTTCTCTGGACAGATAGTCCTGGGTTCTATAAGAG
AGCAGGCTGAGCAAGCCATGGTGAGCATGCTAGAAAGGAGCACCCCTCCA
TGGGTTCTGCATCAGCTCCTGCCTCCAGGTTCCTGCCCTGTGTGAGTTCC
TCTGTCAGTGCCAGACTTCAGTGTGGCAGTGTAAGCCGAATAGACACTTT
GCTCCCTAGTTTCTTTGGGCACGGTGTTTTATCGCAATGCTAGTAACCCC
GAGACATCCTGGGTGCTAAGAATTGATAGGCTGGACGCTCGGGAAAATCA
CGCCGTGGCGCTTAACCATTGAGCCCGTTTTGGTCTTCTTTCCTCCTTTT
ATACCGTTTTCTGATTCATTTGCTCATCATTCCATTGTTTTTATTCAATT
TTTCGTTTTCAGACTTTCCTTTCTATTCCCCTCGTATCTCCTTCTATATA
CCTCTCATCGTCCCACCGATCTTCCCTATTCTCCAACCTCTGT
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGCTGCCCGGTGGCTGCCTGGGTCCTGGGATAA
CAAACAACACCCTAAAAAGGCAGAGGGGTTGGCCAGTCAGCCTGGGGAAT
TTCCTGGGAAGAAAGCCTGGAAGAAATTGTCCCTCTCAGGCCTGGGTTCT
TCTAGCCCAGGACTTGAAGTAGTAGTCATCAGGAACCTCCCTTTAGATAC
GTACTGGGCCCTGGCCTTCTGCTTCCACACTACTCCTAAGATCTCCTCAC
CACGGGGCTGAGAATGTAAAGAGAACGCAACCAAAACAGGACAGTCCATG
ACTGGCTACAAAGCAACTAAGGCCGGGCACCAACAGTGTCCAAAGGATGC
TGACATGCTTATCCCAGTACACATATCATCTCACAACCTTCTCCAACAAC
CACACACAGAAGGTGGCTTCCTAAGCAGACAGCACAGCAGGGCTTCAAAC
AGGCCCAGTGAGCCCAAGCTCAGTGGTAACTGCCACACACCAAGACTCAG
ACAAGGCATGGCTTCACAAGTCCAAACAGAAAGCTGTGAAAGTGGTGGTC
TAGTCACCCTGTCAGCCTAATGTCTGTACCTCCCATCTCACACAGCAAGG
CTAAGAACCCAGTCAAGGAGCTCTGGGTTCCCCTTTTTAATCCACCCCTT
AACTGACCTGAGTCCTCCGGTCAATCTATTTTTCCTCCTGGGCTCACAAC
CTAAAAAAAGGTCTTTCTTGGGTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_n01.g1 MSMg01no426_n01.g1 CHROMAT_FILE:
MSMg01no426_n01.g1 PHD_FILE: MSMg01no426_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:29 2005
         (526 letters)



>mm_chr2_35555959_35556884
          Length = 926

 Score =  986 bits (510), Expect = 0.0
 Identities = 522/526 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctgcccggtggctgcctgggtcctgggataacaaacaacaccctaaaaaggcagaggg 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 agctgcctggtggctgcctgggtcctgggataacaaacaacaccctaaaaaggcagaggg 667

                                                                       
Query: 61  gttggccagtcagcctggggaatttcctgggaagaaagcctggaagaaattgtccctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gttggccagtcagcctggggaatttcctgggaagaaagcctggaagaaattgtccctctc 607

                                                                       
Query: 121 aggcctgggttcttctagcccaggacttgaagtagtagtcatcaggaacctccctttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aggcctgggttcttctagcccaggacttgaagtagtagtcatcaggaacctccctttaga 547

                                                                       
Query: 181 tacgtactgggccctggccttctgcttccacactactcctaagatctcctcaccacgggg 240
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 546 tacgtactgggccctagccttctgcttccacactactcctaagatctcctcaccacaggg 487

                                                                       
Query: 241 ctgagaatgtaaagagaacgcaaccaaaacaggacagtccatgactggctacaaagcaac 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctgagaatgtaaagagaccgcaaccaaaacaggacagtccatgactggctacaaagcaac 427

                                                                       
Query: 301 taaggccgggcaccaacagtgtccaaaggatgctgacatgcttatcccagtacacatatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 taaggccgggcaccaacagtgtccaaaggatgctgacatgcttatcccagtacacatatc 367

                                                                       
Query: 361 atctcacaaccttctccaacaaccacacacagaaggtggcttcctaagcagacagcacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atctcacaaccttctccaacaaccacacacagaaggtggcttcctaagcagacagcacag 307

                                                                       
Query: 421 cagggcttcaaacaggcccagtgagcccaagctcagtggtaactgccacacaccaagact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cagggcttcaaacaggcccagtgagcccaagctcagtggtaactgccacacaccaagact 247

                                                         
Query: 481 cagacaaggcatggcttcacaagtccaaacagaaagctgtgaaagt 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cagacaaggcatggcttcacaagtccaaacagaaagctgtgaaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)