BAC Information

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BAC

Clone NameMSMg01-426O19
Chromosome2 (Build37)
Map Location 29,756,145 - 29,756,497
singlet/doubletsinglet
Overlap geneOdf2
Upstream geneDdx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1
Downstream geneGle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426O19.T7 (MSMg01no426_o19.b1)MSMg01-426O19.TJ (MSMg01no426_o19.g1)
ACCAG520247AG520248
length800799
length of high quality
(start - end)
370 (45 - 414)382 (74 - 455)
definitionCHROMAT_FILE: MSMg01no426_o19.b1 PHD_FILE: MSMg01no426_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:38 2005CHROMAT_FILE: MSMg01no426_o19.g1 PHD_FILE: MSMg01no426_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTTTAATCCTGAGTGCTGGGATTAAAAAGGCATGGCCACCTCTT
GCACCACCATGTGTTTGTTTGTTTCTTTTTCTCTTTTTTAAAAGGTTGAG
TGTCTTTATGTTGCCTGATCTGATCTTGAACTCCTCTTCCAGAAGTCTCA
GCCTCCCCAGTAGCTGGGACTATTCAGGCACACAGCACACAAACCTAGCC
TTCTTTATAACTTAACATTCTAACCCATGCCTTTTTCAATGTTAGAAATT
CTTCAAAACCATCATTTAGACTTGGGCAGGTAATGTTTCCTTCAGGAGGG
TCTGGAGTGGTTGATTCCTGGGCAGGAGCTCTGGGTTGCCATTGCAGTGT
GTCGGCTCTGCCAGCCACTTTGGCAGTCAGCAAAACTCCACAGAGCAAAT
AAGTACACTTCTGTTCGAGGGTCGGCCTTATCAGCTTATCTATCTCTCCC
TCCTTTTGATCAGAAACCACCTTCCTTGCCTGGAGAACACACCCACCATT
TTCCGAAAAAGTTGGGGTCCGTGGATGCGATTAAAGGGCCCTTTTTTCCA
AAAAAAAAAAATCTTGGCCTTGTTAAATAAACCTGTCCATAAAAAAATAG
TGCGTTATATGACGGGCCCGGGTTTTTTACACTTATTAGGTGGGAATTGT
TTTTTTTTTTTTTTTTCCTTTACATAATTAAAGAGGTAAAATTGTTTATC
TGTGTTATTTTCTTCTCACCTTCTTTGTCTCTCTCTTTCTCACCAGTCTG

CATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGCCCTGACTTCCTTTGGTGATGAAA
TCTAACTGTAAGTCAAAGGGACTTTTCTCCCTGCGTTGATTTTGGTTAGT
GTTTTATCCCAGAAACAGAGAACAAGCTAGGGTAATAGACCAGGCGGGTC
TCAAACTTACAGGGATCGGTATGTTCCTGCCTTCCAAGTGCTGGGATTAA
AGGAGTGTGCCACCACATAGAGGATACAGTATGTGCTCTTAAACCACGAA
GCCATCTTTCCAGGAAACGATCCCCCAGCTGTGTGTGTGCACAGCCGTGT
ATGCAGGTCTGAAGACAGCTTCAGGAGTCTGCTCTCTCCACTATGTAGGC
TTTGGGAATCGGATCCAGGTCATTGGACTTGGTGATAAATCAGTGCCTTT
ATCCACTGGACCATTTTGCTGGTCATGACCCTGGGTTTAATCTCCTTTCA
GAAAAGTTGCCAGACAGCGGGTATTTGCCACAGCCGAGTCCTCTGCCCAG
GCCCGGAACATTGGAATGCCCACTGTAAGCAAAAAGGCCCCCATAAAACC
TCGGCCTTGGTTCCTGTTTTCCCTAATAAAACCCTCTTGTTGGAGATTCT
TTTTCCGGGTGTGGTGTGTTCGGTTTTCCCTTAATTCTTATCTCATTTGG
CTATTTCCTTCCTTCCTTCTTTTACTTCCTCTTCTTTCTCTGTACCTCCC
TCCTTTTCTTATTCTCTTCTCTTTCTTTTTCCCTGATCCCTTTCCGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_o19.b1 MSMg01no426_o19.b1 CHROMAT_FILE:
MSMg01no426_o19.b1 PHD_FILE: MSMg01no426_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:38 2005
         (370 letters)



>mm_chr2_29755928_29756697
          Length = 770

 Score =  667 bits (345), Expect = 0.0
 Identities = 351/353 (99%)
 Strand = Plus / Plus

                                                                       
Query: 18  atcctgagtgctgggattaaaaaggcatggccacctcttgcaccaccatgtgtttgtttg 77
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 218 atcctgagtgctgggattaaaaaggcatggccaccacttgcaccaccatgtgtttgtttg 277

                                                                       
Query: 78  tttctttttctcttttttaaaaggttgagtgtctttatgttgcctgatctgatcttgaac 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tttctttttctcttttttaaaaggttgagtgtctttatgttgcctgatctgatcttgaac 337

                                                                       
Query: 138 tcctcttccagaagtctcagcctccccagtagctgggactattcaggcacacagcacaca 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tcctcttccagaagtctcagcctccccagtagctgggactattcaggcacacagcacaca 397

                                                                       
Query: 198 aacctagccttctttataacttaacattctaacccatgcctttttcaatgttagaaattc 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aacctagccttctttataacttaacattctaacccatgcctttttcaatgttagaaattc 457

                                                                       
Query: 258 ttcaaaaccatcatttagacttgggcaggtaatgtttccttcaggagggtctggagtggt 317
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 458 ttcaaaaccatcatttagacttgggcaggtaatgtttccttcaggagggtctagagtggt 517

                                                                
Query: 318 tgattcctgggcaggagctctgggttgccattgcagtgtgtcggctctgccag 370
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tgattcctgggcaggagctctgggttgccattgcagtgtgtcggctctgccag 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)