BAC Information

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BAC

Clone NameMSMg01-427E01
Chromosome2 (Build37)
Map Location 173,876,033 - 173,876,285
singlet/doubletsinglet
Overlap genenone
Upstream geneCtcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901
Downstream geneStx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427E01.T7 (MSMg01no427_e01.b1)MSMg01-427E01.TJ (MSMg01no427_e01.g1)
ACCAG520498AG520499
length744758
length of high quality
(start - end)
254 (77 - 330)256 (81 - 336)
definitionCHROMAT_FILE: MSMg01no427_e01.b1 PHD_FILE: MSMg01no427_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:04 2005CHROMAT_FILE: MSMg01no427_e01.g1 PHD_FILE: MSMg01no427_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCGGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAG
GATCCGCGGAATTCCAAACCATGTCAAGTATTGGAGGCCCCCTGTGCTAT
TTGTATGAGAAACAGGGTCCCACATGGAACCCCCCCTTTTTTTTAAAGAC
AGGTTGTCAAATAGCCCAGGTTGGCCTCTAAATCACTGTGTGGAGAAGAC
GACCTTGAACTTCTGATCCTCCTGTCTCCACCTTCCGAGGTTATAGATGT
GGGCTACCAGGCCTGCTTCATGCACTGCTGGGGTCTTACGATGCTAGGAA
AGCACTAAGCTACACCCTCGCGTCCGGAATGTTTTCTGGAGGATGCCTAC
TTAAGCTTGTCCCATGCCCCTCCTTAGCTTGTGGGATCCCCTAACACATC
AAACAAATTAAAACGAGGCCGCACTTTAAGGAAAATTTGTTTTCAGTAAA
GATATTTAAGAGAACTTTAATGATTTCGCTTTTTAAATGATCTGGCTGTG
GGTAATTTATGATAGTCTCAATTACCTGTGATTTACCCCACAACCAATAG
GCATCTTCAGATTCCCCGTGCCTGTTTTCTCAAATGTAATGAAACTTTAT
GATTCCTCTATCAGGAAGGAAGGCTGCGTGCCAAGGAGACGGCGCTGCTG
CTCTTGGCAGGCGGTTAATGAAGTTAGTGTTACTTTTGAATTTGCAGCTT
TCTTGTTGAAAAACAAAGCCCGATCATTTTTCTTTCCGTTGAAN
NCCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTTTATGTTATAGACCC
AGAGGATGAAGATGCTGACCTTCAGCCCCCAAAGCAACTGGGGTATCTCT
CTCTTGGCAAATGGCTTCATGCCACATTACAAAATCATCCTTCTCAAGGA
AGTGATAAGACTGACAAGTGTTTAGACTTTGCCCTAATTTTTCAAGAGGC
TGAAGCAGAGATACTTCTCTGAAGCTCTTGGGTCCTGGTTTCAATTTGCT
CCGGGTATCTATTGAGCATAAACAGCCCCTTTCNATCATGGGGNNNNCCC
CCCTGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNCGGGNNNNNNNNNC
GGNNNNCCCCNNNCNCGGNNNNNNNNNNNCGCNCNNCNNCCGCNGNGCCG
CGNNCCCCGCNNCCCCGCNNCNCCGGCNCNCCCCCNCCCGCCCCNCCCCG
CNNCCCCCCCCCCCCCCCCGCCNCCCCCCCCCCCCCCCCCNCCCCCCCCC
CCCCCCCCCCNNCCCCCNCCCCCCCGCCNNNCCCCCCNCCNCCCCCCCCC
CCGGCCCCCCCGCCNNNCNCNCCCCCCCCCCCCCCCNCCCCCCCCCCCGC
CCCCCCCCCCCCCCCCCCCNCCCCCCNCCCCCCCNCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCGGCCCCCCCCCCCCCCCCCCCCCCCCC
NCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_e01.g1 MSMg01no427_e01.g1 CHROMAT_FILE:
MSMg01no427_e01.g1 PHD_FILE: MSMg01no427_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:04 2005
         (256 letters)



>mm_chr2_173875833_173876488
          Length = 656

 Score =  482 bits (249), Expect = e-140
 Identities = 252/253 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtttatgttatagacccagaggatgaagatgctgaccttcagcccccaaagcaactg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 453 agtgtttatgttatagacccagaggatgaagatgctggccttcagcccccaaagcaactg 394

                                                                       
Query: 61  gggtatctctctcttggcaaatggcttcatgccacattacaaaatcatccttctcaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gggtatctctctcttggcaaatggcttcatgccacattacaaaatcatccttctcaagga 334

                                                                       
Query: 121 agtgataagactgacaagtgtttagactttgccctaatttttcaagaggctgaagcagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agtgataagactgacaagtgtttagactttgccctaatttttcaagaggctgaagcagag 274

                                                                       
Query: 181 atacttctctgaagctcttgggtcctggtttcaatttgctccgggtatctattgagcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atacttctctgaagctcttgggtcctggtttcaatttgctccgggtatctattgagcata 214

                        
Query: 241 aacagcccctttc 253
           |||||||||||||
Sbjct: 213 aacagcccctttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)