BAC Information

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BAC

Clone NameMSMg01-427H03
Chromosome2 (Build37)
Map Location 67,589,259 - 67,742,386
singlet/doubletdoublet
Overlap genenone
Upstream geneScn7a, LOC383707, LOC100039540, Gm1322, Cmya3, LOC621171
Downstream geneLOC227995, B3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427H03.T7 (MSMg01no427_h03.b1)MSMg01-427H03.TJ (MSMg01no427_h03.g1)
ACCAG520645AG520646
length766758
length of high quality
(start - end)		508 (51 - 558)522 (82 - 603)
definitionCHROMAT_FILE: MSMg01no427_h03.b1 PHD_FILE: MSMg01no427_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:19 2005CHROMAT_FILE: MSMg01no427_h03.g1 PHD_FILE: MSMg01no427_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,741,882 - 67,742,386)(67,589,259 - 67,589,780)
sequence
NTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATTAAGTGCCAGTGTGTGCCTGGCTTGAATATGGTTAAT
ATTCAAGATTACCCCAGCTAAGCTGTATCATTCTTAATCTTACTTGTGTT
AAGATTCAACTTAAAAACATGGCTAGCCAATAATTGTCACCAAATGTGAT
TTGTAAGTCTTCTTGAATATAGTACTTTTTCTTTCTTAGGATTAACAAGA
TTTGAAAGGATATTACTATGAATCTCTTTTGAAGTGTAGTTCCCCACTCA
TCTGACAGAATACTGTTCTGAAGAATATCCAACAATTCCCCTACCTCTCT
TTACTGATGGCATTTGTTAATTAGTTTTTCCCATAGGGGCCTTCTCTGTG
CTCTCTGGGCAATTAGAGGAAAACACTCAGTACACATTACTGATCTGGTG
GTTAGTTCCTCCCACTGGAGGGAATATGGAAGAAGGCATTGTTAGAGAAC
CGAAGAGTTAAAAAAGTGTAAAGTTAAACAGAAAAAGCAAACCAAAGGGT
TGGAATAGCAGGAAGAATTATACTTTGGCTGGAGATTCATGGAACTTTTG
CCCCTGCCCCCTCTAATTCATTGGGAGGCTGCAGAGAGTGCCATGCATAA
ATTTCCAGGGAAGAGTCTCAGATTGTAAGCTTAAACAGCCCGCTCTAAAG
CCCGTCTACGAAACCAAAAAAGGGTCTTAAACCCTGCGGTTTGTTTTTTG
GCCCTTTTACGAAGCT

NNCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGATGGGAAGAATCGTG
AGATCTTCACATCACTGTTTTCCATAGCAAGGAGGTCAGGAGCTAAGTAA
AGGAAAAAGAGAACTCTGGGGGGTGGGAGGAAATAGACTATTATTTGTGA
TTCAAAGACAATATTGTTGTAAACCTGCATACAGTCAATCCCAGAGGGGG
TTGAGCTTACAGCAGTAACTATTGATAAGTTCCTTCCCCAGAACAGGAGG
GAGGAGGTAGGAGGCATCTTAGTAACACGAATAGTTCCTGAGAAGAGCCA
CGGGTAGCTCTTCTCTGGCCCCAGTTTCATTGTTGGTCCATTTGTTCTTC
TCCTCCATCTTGTCCAGTGACAACACATCACTTTGACCACACATAGAACC
TATAACTGGGTGTCGTCAAACATGTCCTAAATGTTACAAATGTATAGCAG
CTTGTCAGAGTCCACTGTGATGTGAAGGGATGACTCTGGATTTGATTGGN
TCCCATGTTGAAAAGAACCTGGCACACTGACTCACATTGGAAGTTTCCGA
GAAGATAATTTTCAGCTTTCAGGAAGAAAATCAGCCCACAGTAAAAGGAA
AGGGATTAAAGGGAATGAACCGGAAATGCCATTATCATGCCTATTACCTA
ATTAAACGAAGACTAACCTGAACTGTACGATCCTGGCGTTAACTGCACAG
GAAGCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_h03.b1 MSMg01no427_h03.b1 CHROMAT_FILE:
MSMg01no427_h03.b1 PHD_FILE: MSMg01no427_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:19 2005
         (508 letters)



>mm_chr2_67741679_67742586
          Length = 908

 Score =  915 bits (473), Expect = 0.0
 Identities = 497/505 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccattaagtgccagtgtgtgcctggcttgaatatggttaatattcaagattacc 63
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 708 ggaattccattaagtgctagtgtgtgcttggcttgaatatggttaatattcaagattacc 649

                                                                       
Query: 64  ccagctaagctgtatcattcttaatcttacttgtgttaagattcaacttaaaaacatggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ccagctaagctgtatcattcttaatcttacttgtgttaagattcaacttaaaaacatggc 589

                                                                       
Query: 124 tagccaataattgtcaccaaatgtgatttgtaagtcttcttgaatatagtactttttctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tagccaataattgtcaccaaatgtgatttgtaagtcttcttgaatatagtactttttctt 529

                                                                       
Query: 184 tcttaggattaacaagatttgaaaggatattactatgaatctcttttgaagtgtagttcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tcttaggattaacaagatttgaaaggatattactatgaatctcttttgaagtgtagttcc 469

                                                                       
Query: 244 ccactcatctgacagaatactgttctgaagaatatccaacaattcccctacctctcttta 303
           ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 468 ccattcatctgacagaatactgttctgaagaatatccaacaattcccctgcctctcttta 409

                                                                       
Query: 304 ctgatggcatttgttaattagtttttcccataggggccttctctgtgctctctgggcaat 363
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 408 ctgatggcatttgttaattagtttttcccaaaggggccttctctgtgctctctgggcaat 349

                                                                       
Query: 364 tagaggaaaacactcagtacacattactgatctggtggttagttcctcccactggaggga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tagaggaaaacactcagtacacattactgatctggtggttagttcctcccactggaggga 289

                                                                       
Query: 424 atatggaagaaggcattgttagagaaccgaagagttaaaaaagtgtaaagttaaacagaa 483
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 288 atatggaagaaggcattgttagagaaccgaagagatgaaaaagtgtaaagttaaacagaa 229

                                    
Query: 484 aaagcaaaccaaagggttggaatag 508
           |||||||||||||| ||||||||||
Sbjct: 228 aaagcaaaccaaagtgttggaatag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no427_h03.g1 MSMg01no427_h03.g1 CHROMAT_FILE:
MSMg01no427_h03.g1 PHD_FILE: MSMg01no427_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:19 2005
         (522 letters)



>mm_chr2_67589059_67589980
          Length = 922

 Score =  942 bits (487), Expect = 0.0
 Identities = 513/522 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggatgggaagaatcgtgagatcttcacatcactgttttccatagcaaggaggtcagga 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggatgggaagaatcatgagatcttcacatcactgttttccatagcaaggaggtcagga 260

                                                                       
Query: 61  gctaagtaaaggaaaaagagaactctggggggtgggaggaaatagactattatttgtgat 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 gctaagtaaaggaaaaagagaactctggggggtggggggaaatagactattatttgtgat 320

                                                                       
Query: 121 tcaaagacaatattgttgtaaacctgcatacagtcaatcccagagggggttgagcttaca 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tcaaagacaatattgttgtaaacctgcatacagtcaatcgcagagggggttgagcttaca 380

                                                                       
Query: 181 gcagtaactattgataagttccttccccagaacaggagggaggaggtaggaggcatctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtaactattgataagttccttccccagaacaggagggaggaggtaggaggcatctta 440

                                                                       
Query: 241 gtaacacgaatagttcctgagaagagccacgggtagctcttctctggccccagtttcatt 300
           ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 441 gtaacacgaatagttcctgagaaaagccacggggagctcttctctggccccagtttcatt 500

                                                                       
Query: 301 gttggtccatttgttcttctcctccatcttgtccagtgacaacacatcactttgaccaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttggtccatttgttcttctcctccatcttgtccagtgacaacacatcactttgaccaca 560

                                                                       
Query: 361 catagaacctataactgggtgtcgtcaaacatgtcctaaatgttacaaatgtatagcagc 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 catagaacctataactgggtgtcgtcaaacatgtcctaaatgttagaaatgtatagcagc 620

                                                                       
Query: 421 ttgtcagagtccactgtgatgtgaagggatgactctggatttgattggntcccatgttga 480
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 ttgtcagagtccactgcgatgtgaagggatgactctggatttgattggttcccatgttga 680

                                                     
Query: 481 aaagaacctggcacactgactcacattggaagtttccgagaa 522
           |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 aaagaacctggcacactgtctcacattggaagtttccgagaa 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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