Query= MSMg01no427_h13.b1 MSMg01no427_h13.b1 CHROMAT_FILE:
MSMg01no427_h13.b1 PHD_FILE: MSMg01no427_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:21 2005
(548 letters)
>mm_chr2_19518004_19518951
Length = 948
Score = 955 bits (494), Expect = 0.0
Identities = 532/546 (97%), Gaps = 4/546 (0%)
Strand = Plus / Plus
Query: 5 gaattcagttcatg--tccgaatagaacggagaaagtgggtggagtgagtgccagcattg 62
|||||||||||||| | |||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcagttcatggtt--gaatagaatggaaaaagtgggtggagtgagtgccagcattg 262
Query: 63 tgtgtgtgtctctctcttcctgctggtggatgcaactagaccactcgcctcacactccca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgtgtgtgtctctctcttcctgctggtggatgcaactagaccactcgcctcacactccca 322
Query: 123 gtgctgtgagctccctgccagcaagtaaaatatttttttccccttaagatggtttcttca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtgctgtgagctccctgccagcaagtaaaatatttttttccccttaagatggtttcttca 382
Query: 183 ggtattttggtacagcagctagaaaagcaatggacataattattaaagagttattactgg 242
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 383 ggtattttggtacagcagctagaaaagcaatggacataatgattaaagagttattactgg 442
Query: 243 gatttaagcattaagaaataccacttcatgtttgataacataggagcctaaaataatgga 302
|||||||||||||||||||||||||||| |||||| ||| |||||||||||||| |||||
Sbjct: 443 gatttaagcattaagaaataccacttcacgtttgagaacctaggagcctaaaatcatgga 502
Query: 303 gttcactttaaaaagtaatattggctgtctgaaggacctgtctttgaatttgtttctgga 362
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 503 gttcactttaaaaagtaacattgggtgtctgaaggacctgtctttgaatttgtttctgga 562
Query: 363 atcgtaagcagaacctgctactggtaggcccaacaggaggggtcctttacccaggaggac 422
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atcgtaagcagaacttgctactggtaggcccaacaggaggggtcctttacccaggaggac 622
Query: 423 ctagctctgatgttcctccagctgtagcatgatatgaggggacccaagaatgtgcctaca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctagctctgatgttcctccagctgtagcatgatatgaggggacccaagaatgtgcctaca 682
Query: 483 gaacatcttacagaacacctccctcttctgaaacatgatcccaatttccccagacttcct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaacatcttacagaacacctccctcttctgaaacatgatcccaatttccccagacttcct 742
Query: 543 ggagca 548
||||||
Sbjct: 743 ggagca 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_h13.g1 MSMg01no427_h13.g1 CHROMAT_FILE:
MSMg01no427_h13.g1 PHD_FILE: MSMg01no427_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:21 2005
(554 letters)
>mm_chr2_19661297_19662254
Length = 958
Score = 1015 bits (525), Expect = 0.0
Identities = 547/557 (98%), Gaps = 5/557 (0%)
Strand = Plus / Minus
Query: 2 cagggatgtgagctaggccttcaggagagtggagaagtgatgaagatgggaggagaaatc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 cagggatgtgagctaggccttcaggagagtggagaagtgatgaagatgggaggagaaatc 800
Query: 62 atagaaggagctgggctggagagatggctcactggttaaaagcactgactgctcttccag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 atagaaggagctgggctggagagatggctcactggttaaaagcactgactgctcttccag 740
Query: 122 aggtcctgagttcaattcccagcaaccatgtcgtagctcacaaccatctataatggggtc 181
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 739 aggtcctgagttcaattcccagcaaccatgtcgtaactcacaaccatctataatggggtc 680
Query: 182 tgatgacctcttctggtgtgcaacagtgtattcacatacataaaataaataaaaggagtg 241
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 679 tgatgacctcttctggtgtgcaacagtgtatccacatacataaaataaataaaaggagtg 620
Query: 242 agtctgacttgtttattttgtagttttctccaaatggagatagaagagggaagaaactaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agtctgacttgtttattttgtagttttctccaaatggagatagaagagggaagaaactaa 560
Query: 302 aatggaggatgaaggattttaagtgcaggtagggaagagagatggaagggcagagggtga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aatggaggatgaaggattttaagtgcaggtagggaagagagatggaagggcagagggtga 500
Query: 362 gtggggcc----agtcaaaacaagtcagtcagaatgctttcaggaaacttgctactctgt 417
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtggggtcaaggagtcaaaacaagtcagtcagaatgctttcaggaaacttgctactctgt 440
Query: 418 tagctaattaaaaataaaatgaaaataaagctaaaataaaaaaagagaataagaagcaag 477
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 439 tagctaattaaaaataaaatgaaaataaagctaaaat-aaaaaagagaataagaagcaag 381
Query: 478 caaaaatgaacaacaaaatgaggatctatgggaagagaaaaggcnagcataagagaaaag 537
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 380 caaaaatgaacaacaaaatgaggatctatgggaagagaaaaggcaagcataagagaaaag 321
Query: 538 agagacngagaggattc 554
|||||| ||||||||||
Sbjct: 320 agagacagagaggattc 304
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 958
Length adjustment: 10
Effective length of query: 544
Effective length of database: 948
Effective search space: 515712
Effective search space used: 515712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
