BAC Information

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BAC

Clone NameMSMg01-428D19
Chromosome2 (Build37)
Map Location 59,909,456 - 59,909,680
singlet/doubletsinglet
Overlap geneBaz2b
Upstream genePkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1
Downstream geneLOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428D19.T7 (MSMg01no428_d19.b1)MSMg01-428D19.TJ (MSMg01no428_d19.g1)
ACCAG521249AG521250
length795757
length of high quality
(start - end)
225 (74 - 298)239 (74 - 312)
definitionCHROMAT_FILE: MSMg01no428_d19.b1 PHD_FILE: MSMg01no428_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:21 2005CHROMAT_FILE: MSMg01no428_d19.g1 PHD_FILE: MSMg01no428_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCAAGACGATGCCGCGG
AATTCTACTGTTACCTTTGATAGTTTGAGTTTTAGGAGATTAGAAAAACC
ATATCTAGTCACTGTCTTTTCCAGACAAATCAAGCCATTCCCTCCTGGAG
GTTTAGTCCTGTAATCCCAGCTACCCAGGAGTGCTGGCTTGATGGGTCGT
TCTGCAGTAGCTTAGCAGGTAGGAGTGATGAGGGAGATGGAGATAGCTCT
GACCTACGTTATGAGGTTTCAGAGGGGAACAAGTAGTCGATCAGGAAGCG
GGACATGCACTATTTTGTTTTATGTTGGCCACTAATCTGGCTTTATTTAC
TTAGCTCCTGCCAATCTAAGTGAAGTTAAATTATGAGATGATGGAGTACT
TTGCTAGAGACGGCCCGCCGCTGAGAATTCAGCTGTGCTTGTTGAGATTC
ACACCACTGCGGATATGCCTGCTTGTTTTTTTCCCGCCGACTCATTTTTT
CCCTATATCCATTCTCTTTTATTCACGGCTTCTTGTCCTAGATTAACCGT
TCTTTCGCCTTTGTACGTTTTTTCCTTTTCACACCTTACTTCCTTCCTAT
CCTTCCTTATTTTTTTCTCCCCCTTTTACATCCTCTTACTGTCATTGTCC
CTTCTGTCTGACCCCCTTTATTTTTACATTTCTCCTCATTTACCCGCCCT
TCTTTACTACCCGCTTCTTTTTTATTCTTTCTTTCCTCTTCTTTTTTTTT
CCCATTATATTCCCTTTTTTTTTCCTTCTTTCATTTTTCATCTTT
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGTGTATGCACACATGTTGACACTAA
GTGCCTTCCTCAGTTGCTCTCTACCTTACTAAACATCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CATCTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCA
TCCATCCATCCACCTACCTTCCTACCTGTTTGTGTTCTACATGTACAGAT
ATGAGCATGCAAGTTATCTGGTCTGTCTGTGTGTGGTGCATGTATGCAGG
TATGTGCTTGCAACAATGTGAGTAGATTCTCTCCTTCTATCACATGGGCT
CTGGAGGATCGAAAACAAATTGTCAGGCTTGATCGCAAACACTTTCTCAT
TGAGCAATCCCACCAGCCATTCCCCACATTTATGCACGCACTTCACTTTT
TGAAACAGAGCCTCCCACTGAACCGGATGCTCATCAATTTGGTTAAGTTG
GTTGGCTAGAGAATTTCTTCCTCTTCTGTTCTGGGTTTAATTAAATATAT
TTTTGATAATTCACATGACTTAAGTGTAAAGAGATGTCGCAAGAAAATAG
CATCCCGTTCGAATTTTATTAGTCTGTTCACTGTAAATTTATTACGTGCG
GTACCTCATTTATTGGATTTATCCTTGTCGTCCACTATAATGTTTTTATT
CCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_d19.b1 MSMg01no428_d19.b1 CHROMAT_FILE:
MSMg01no428_d19.b1 PHD_FILE: MSMg01no428_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:21 2005
         (225 letters)



>mm_chr2_59909368_59909992
          Length = 625

 Score =  404 bits (209), Expect = e-117
 Identities = 221/225 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgagttttaggagattagaaaaaccatatctagtcactgtcttttccagacaaatcaa 60
           |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 313 tttgagttttaggagattagaaaaaccatatccagtcactgccttttccagacaaatcaa 254

                                                                       
Query: 61  gccattccctcctggaggtttagtcctgtaatcccagctacccaggagtgctggcttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gccattccctcctggaggtttagtcctgtaatcccagctacccaggagtgctggcttgat 194

                                                                       
Query: 121 gggtcgttctgcagtagcttagcaggtaggagtgatgagggagatggagatagctctgac 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 193 gggtcgttctgcagtagcttagcaggtaggagtgatgggggagatggagatagctctgac 134

                                                        
Query: 181 ctacgttatgaggtttcagaggggaacaagtagtcgatcaggaag 225
           ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 133 ctacgttatgaggtttcagaggggaacaagtagtctatcaggaag 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)