BAC Information

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BAC

Clone NameMSMg01-428F10
Chromosome2 (Build37)
Map Location 123,865,936 - 123,866,175
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream gene4930517E11Rik, LOC100043360, Sema6d, LOC100043367, LOC100043369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428F10.T7 (MSMg01no428_f10.b1)MSMg01-428F10.TJ (MSMg01no428_f10.g1)
ACCAG521327AG521328
length749749
length of high quality
(start - end)
269 (48 - 316)240 (81 - 320)
definitionCHROMAT_FILE: MSMg01no428_f10.b1 PHD_FILE: MSMg01no428_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:29 2005CHROMAT_FILE: MSMg01no428_f10.g1 PHD_FILE: MSMg01no428_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTATTTTTTCGGTCTACTTGTCTGTCACTATACCAGTACCCTGC
CATTTTTATCACAATTGCTCCGTAGTAAAGCTTTAGTTCAGGGATGGTGA
TTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGT
TTTTTGTTATTCCAGATGAATTTGCAGATTGCTCTTTCTAATTCGTTGAA
TAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGCAGATTGCTT
TTGGCAAGATAGCTATTTTTTTTATGTTGATCCTGCCAATCCATGAGTAT
GGGAGGTCTTTCCATCTTCTGAGATCTTCCTTAATTTCTTTCTTCGGAGA
CTTGAAGTCTTTATAATACAGATCTTTCACTTCCTTAGTTACAGTCTCGC
CAAGATACGTTATATTATTTGTGACTATTGAGAAGGGTGTTCTTTCTCTA
ATTTCTTCCTCCTTCCGTTTATTTTTTGTGTCTATAATGCGTCCCGACTT
GTTTGATATACTTCCATTTTTCGCTATTTCCCTTAAATCGCCTCTCTTTT
TTATCAGTTCTCTGCCGTAATTTTTTCCCTTACCTGACCTTTATTTCCTT
TTCCCTCTGGCCCACACCCATTTTCTTGTCCTTCCTCCTTTTACTACCCT
TTTTCCCCCCCCGCTTTTTCTTTTCTTCGTCTCACCTTTTTCTTTTTCC
NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCCTTAGCCAATCAGCCA
ACACATAAATCAACAAACCAACAAAACAAAACAAATTACCAAATCAAAAA
ATACAGTTCTGTTTCTGTCCTAACTCTTGTGTTTGTTTTTCAATAGTCTG
AGATTTCTGTTTTTGGATATACATGAAGTTCTGGCATGGCCATTGGAGAC
AATTGATGTTGGTTCCTGGGTTGTGTAGATGAAACTATCTGGTCCTAGCT
GTGTAACAGATAGTAGGACAATTTTCTGGCCAAGCCTGTCATGCGGGTGC
TCACCTCCGGATAAGTGGGAATCAAAGTCTCTGTAGTCTGGATATTGACT
TCTGGATGATCAGTTGAGCCAAAGCCTTGGGGGTCCATGTTGGCCTCTGG
GACCATAAGCAGAGGTCAAAATCTCAGCGACTGTTTGACTTCTAAGGTCT
CCATGTTGACCTTTATAATTACAGGCAATGTCAAATCTTCAACTTTGCTT
ACAATGAACTCCAGGGTGATTGGTAGGGTTTAAATCTTTCTATGCACTGT
CCTCTGAAGGCCACAGCTCAGGGTCAAACCTTTGACATGCGCGCTCATCT
GTATGTATTTGACACACTTTTTGCACCGATTAAATTGTCTAACCTTATCT
GAAATTTCAATCATTTAAGCATTTGTCCTAAGCCTTTGCCTAATGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_f10.g1 MSMg01no428_f10.g1 CHROMAT_FILE:
MSMg01no428_f10.g1 PHD_FILE: MSMg01no428_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:29 2005
         (240 letters)



>mm_chr2_123865736_123866375
          Length = 640

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgccttagccaatcagccaacacataaatcaacaaaccaacaaaacaaaacaaattacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgccttagccaatcagccaacacataaatcaacaaaccaacaaaacaaaacaaattacc 381

                                                                       
Query: 61  aaatcaaaaaatacagttctgtttctgtcctaactcttgtgtttgtttttcaatagtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaatcaaaaaatacagttctgtttctgtcctaactcttgtgtttgtttttcaatagtctg 321

                                                                       
Query: 121 agatttctgtttttggatatacatgaagttctggcatggccattggagacaattgatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agatttctgtttttggatatacatgaagttctggcatggccattggagacaattgatgtt 261

                                                                       
Query: 181 ggttcctgggttgtgtagatgaaactatctggtcctagctgtgtaacagatagtaggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggttcctgggttgtgtagatgaaactatctggtcctagctgtgtaacagatagtaggaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)