Query= MSMg01no428_f17.b1 MSMg01no428_f17.b1 CHROMAT_FILE:
MSMg01no428_f17.b1 PHD_FILE: MSMg01no428_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:30 2005
(575 letters)
>mm_chr2_67900019_67900992
Length = 974
Score = 959 bits (496), Expect = 0.0
Identities = 511/516 (99%), Gaps = 1/516 (0%)
Strand = Plus / Minus
Query: 5 gaattccatgattatctctagaatttctgatgaagtagctgcaatatcacagggatatat 64
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattccatgaatatttctagaatttctgatgaagtagctgcaatatcacagggatatat 456
Query: 65 aatcaaacgtggatataataaatatgatgagattttcaattatgcctgcatctcattaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aatcaaacgtggatataataaatatgatgagattttcaattatgcctgcatctcattaca 396
Query: 125 taaatagtaagaatgcttggttatattgcattaaatatttaggcatgatcccaaactaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 taaatagtaagaatgcttggttatattgcattaaatatttaggcatgatcccaaactaaa 336
Query: 185 acacttaggaagtaattaacagggttgacctctgaggagagaagggggctggtgtgaaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 acacttaggaagtaattaacagggttgacctctgaggagagaagggggctggtgtgaaag 276
Query: 245 ccagtgtaaagggctttctttttattctctatgcttctgtgttgcttgaaatatttataa 304
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ccagtgtaaagggctttc-ttttattctctatgcttctgtgttgcttgaaatatttataa 217
Query: 305 caatgtgcattcaaatattaatttataattgaaattaataaaaagaaaacaatcaaataa 364
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 216 caatgtgcattcaaatattaatttataattgaaattaataaaaaggaaacaatcaaataa 157
Query: 365 cgtgatattgactgccccactgggatctggaaagaccagcctccaggccctctctctcct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 cgtgatattgactgccccactgggatctggaaagaccagcctccaggccctctctctcct 97
Query: 425 acgcctttattttccactaggcgtaaaatccaaagctgagatatactttcctaccttata 484
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 96 acgcctttattttccactaggcgtaaaatccaaagctgagatctactttcctaccttata 37
Query: 485 ctctctgaaattgcctgcaatcatattcaccaattt 520
||||||||||||||||||||||||||||||||||||
Sbjct: 36 ctctctgaaattgcctgcaatcatattcaccaattt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 974
Length adjustment: 10
Effective length of query: 565
Effective length of database: 964
Effective search space: 544660
Effective search space used: 544660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_f17.g1 MSMg01no428_f17.g1 CHROMAT_FILE:
MSMg01no428_f17.g1 PHD_FILE: MSMg01no428_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:31 2005
(505 letters)
>mm_chr2_67764423_67765326
Length = 904
Score = 872 bits (451), Expect = 0.0
Identities = 487/499 (97%), Gaps = 1/499 (0%)
Strand = Plus / Plus
Query: 4 tcttttattgcaagcataaagctgacagagggaactgaaagtactataatcttttaaact 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tcttttattgcaagcataaagctgacagagggaactgaaagtactataatcttttaaact 263
Query: 64 cactgactccagtgacatacttcctccaataagatcgcactgcctaaaacttcccaaata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cactgactccagtgacatacttcctccaataagatcgcactgcctaaaacttcccaaata 323
Query: 124 ttgcaattaactgcagaccgagtgcctgatatgatgtgatacatttttcattcagactat 183
|||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||| |
Sbjct: 324 ttgcaattaactgcagactgagtgcctgagatgatggggtacatttttcattcagactct 383
Query: 184 cacagtgagtcatgtcctacattctctgccccaatgaatcctaagaacgctcagaaagat 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 cacagtgagtcatgtcctacattctctgccccaatgaatcctaagaactctcagaaagat 443
Query: 244 gagtccttagcatcccatgagcctcttaaaacggggttgtctcatggtcttccactttga 303
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagtccttagcattccatgagcctcttaaaacggggttgtctcatggtcttccactttga 503
Query: 304 gatagatgctgacaggagtaggcaaagatgagctgtgggtcaaacatatccaggtttcag 363
||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 504 gatggatgctgacaggagtaggcaaagatgagctgtggttcaaacagatccaggtttcag 563
Query: 364 ggcagattccaagctccaacatttttgtagtttgattctcaacaagttatttgatatctc 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggcagattc-aagctccaacatttttgtagtttgattctcaacaagttatttgatatctc 622
Query: 424 ggaacctgcatttattaaagtttaaatatgtaaaattgtacctcatatattaaccataag 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agaacctgcatttattaaagtttaaatatgtaaaattgtacctcatatattaaccataag 682
Query: 484 ggtttccaaggcttggcat 502
|||||||||||||||||||
Sbjct: 683 ggtttccaaggcttggcat 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 904
Length adjustment: 10
Effective length of query: 495
Effective length of database: 894
Effective search space: 442530
Effective search space used: 442530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
