BAC Information

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BAC

Clone NameMSMg01-428I02
Chromosome14 (Build37)2 (Build37)
Map Location 97,721,926 - 97,722,025131,100,817 - 131,101,061
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428I02.T7 (MSMg01no428_i02.b1)MSMg01-428I02.TJ (MSMg01no428_i02.g1)
ACCAG521455AG521456
length743750
length of high quality
(start - end)
244 (80 - 323)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no428_i02.b1 PHD_FILE: MSMg01no428_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:42 2005CHROMAT_FILE: MSMg01no428_i02.g1 PHD_FILE: MSMg01no428_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:42 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(97,721,926 - 97,722,025)(131,100,817 - 131,101,061)
sequence
NGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCAGAGAAGGC
GCGGAATTCCAGACAAATACATCATGCAAGGAAGTTTTAAAGCAATTCAT
GTCTTCGAATCCCAGGAAATATAGAAGGGAACGATGCCTTCTCAAGCAAG
GCTATGATCATGAAGACAAGGAGCAAGATGATAAAAGCTGTTAACTATCT
GTTTTACTGATGGAGACAAGAATAACAAGAAACTTCAGAGTGCTCATTTT
AGAAAATTAAAGGCTTGATTTTCCTAAGAACTACATTTGACTTATCTGAA
CTTTGACTACATTTTAGTCAAACATTTTTTTGCATGAAAAATATTTCATT
AACTACTCTATGGCAATAAACTTCCAATTTATCCATCCACCTGTGAATAT
GGACGTGACTCCCAGTAAGGTGGACAGTGGGCCTAAGAAGGAGAAAGACC
ACCATGTGGATGTTTCAGTGCAGTGAAGGGTGAACAAAATACTAGCAGGA
GGAAATATGGAGACAAAGTGTTAAGCCTAGACTGAACGAAAGGCCATCCT
GAGACTGCCCCACTTGGGGATCCTTTCTGTTTTCCAAACCGTTACACCCC
TGCGCATGCTGGGTAGTGCTCGCCGATGACCGCCTGATCGTTTTACGGTC
TTCTGAGAGATTCTGTCTGTTTAATCTGACCAATACCGATGCCTTTGCTT
ATAGTCTTCCCCTGTCTCCTATTGCTTGTTTTTCCTCTCGCCC
TCTTCTATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTAGTGAAGAATCGAGAGAA
AGTTGGTGACACCCGAGAAGTAACATCTCAGGTTGTCCTCTGATTTCCAA
ATGTGCACACGCACTATCTGGGCACAAAACTGTTTCCAATCATGTGTACC
TCATATTGTCTCTTCTGCTACCTCAGTTATTTTCCAGCATGTCTGGTTAA
AAGTTTGTGTTTTTGAGGAGTAGTGGGGCAGGAGTGATGGCTAAGTGGTT
AAGAGCTCTGGCTTCTCCTCTATTTTATTCCAGGTTTGATTCCTAGAACC
CACATGGTGACTCACAACCATGTGTAACTACAGTTTCAGGGGATCCAGGT
AAATACATGTGGTAAATGTATACATGCAGGCAAAACCCCATACACATATT
TAAAAATAGAACAAAAATTTTAAAGTGGTTTGTTTCAGGCATTAAAGCTG
ATAGCCGACCTGTTTTACTCAAACTAGGCAAATATAGTCCCAGTTTGTGC
TATGCTTGCCAACCAAATTTCTCAACTGTATTTAAACTCTTAATGCCAGT
ATAATATTGGGTATTATGTTTTGCTTTTCTTCTGTGACTTACCAAGGTTT
GATAACACTTTTCTTGACCATTGTAGTGTTAAAACCGGTCCAACCCACCC
AGCGTATTGGCCTTCACTCCCAAACTTAATTTTTCATTCTGCTGTTTCCG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_i02.b1 MSMg01no428_i02.b1 CHROMAT_FILE:
MSMg01no428_i02.b1 PHD_FILE: MSMg01no428_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:42 2005
         (244 letters)



>mm_chr14_97721653_97722296
          Length = 644

 Score =  178 bits (92), Expect = 3e-49
 Identities = 98/100 (98%)
 Strand = Plus / Minus

                                                                       
Query: 74  tatgatcatgaagacaaggagcaagatgataaaagctgttaactatctgttttactgatg 133
           |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 373 tatgatcacgaagacaaggagcaagatgataaaagctgttaaatatctgttttactgatg 314

                                                   
Query: 134 gagacaagaataacaagaaacttcagagtgctcattttag 173
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gagacaagaataacaagaaacttcagagtgctcattttag 274


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no428_i02.g1 MSMg01no428_i02.g1 CHROMAT_FILE:
MSMg01no428_i02.g1 PHD_FILE: MSMg01no428_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:42 2005
         (245 letters)



>mm_chr2_131100617_131101261
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggctagtgaagaatcgagagaaagttggtgacacccgagaagtaacatctcaggttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggctagtgaagaatcgagagaaagttggtgacacccgagaagtaacatctcaggttgt 260

                                                                       
Query: 61  cctctgatttccaaatgtgcacacgcactatctgggcacaaaactgtttccaatcatgtg 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctgatttccaaatgtgcacacacactatctgggcacaaaactgtttccaatcatgtg 320

                                                                       
Query: 121 tacctcatattgtctcttctgctacctcagttattttccagcatgtctggttaaaagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacctcatattgtctcttctgctacctcagttattttccagcatgtctggttaaaagttt 380

                                                                       
Query: 181 gtgtttttgaggagtagtggggcaggagtgatggctaagtggttaagagctctggcttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtttttgaggagtagtggggcaggagtgatggctaagtggttaagagctctggcttct 440

                
Query: 241 cctct 245
           |||||
Sbjct: 441 cctct 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)