BAC Information

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BAC

Clone NameMSMg01-428M01
Chromosome2 (Build37)
Map Location 125,867,226 - 125,867,756
singlet/doubletsinglet
Overlap geneFgf7
Upstream geneSlc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2
Downstream geneDtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428M01.T7 (MSMg01no428_m01.b1)MSMg01-428M01.TJ (MSMg01no428_m01.g1)
ACCAG521645AG521646
length740740
length of high quality
(start - end)
531 (78 - 608)252 (80 - 331)
definitionCHROMAT_FILE: MSMg01no428_m01.b1 PHD_FILE: MSMg01no428_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:01 2005CHROMAT_FILE: MSMg01no428_m01.g1 PHD_FILE: MSMg01no428_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGGTCATTTTTCCTGCAGAAAGCAGTGCCTGCTCAGAA
CTACTGAGCCATCTCTTCATCAGCTGTCCAATGACCTCTAACACAGCTTT
TCAGAGCATGCGCATAGAAAAGGGTTTTTATTTTCAACCTGCTTGGAGTA
TAGGAAGATTAGCTATTGCCCAGACTTTTTTTCGATATGTGCTCTGTGCC
ATATGTGAAATTTAAATGTAGAGATACTGTGTTGTTCCATACTGATGCTA
CAGATGTTTCCATGCTACCAAAACTATTTATTCTAAAAACAAAACAAAAC
AAAAAGTAACCAAAGTGCAGCCTTCGTGTTGTGTATAATCCCAGCCTTGC
AAAGAGGACAAGCATCTAGCTTCCATTCCTTTCCACTAGACTGGAAACAT
CCTTTGGGGACCTGCAGTTCTGTCCACGCTGGGTTTTTTAGATTAGCCAC
TGTCTTTTCAGTCTCTTTCCTCTGAATTTAGTAGCATGGCTATGAGAAAT
GAAAGCCTAATTTAGAAGTGTCTGTGAGTTCACAGAAGCAGACAGACACT
GATGTCTGCACCTCCTCCCTTGGCCCCCTGCTCCAGCACCTGTCACGATG
CAGCTGCGCCATCCAATTAAGCAATCTTCTTATATCATGTCATGCGAACT
GTCTCTACATGCGTGTTTAGGTCTGTTCCCCCTATGTTGA
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTTGGGTCTTCAATTCTA
TTCCCCTGATCTACCTGTCTGTCTCTGTACCAGTACCATGCAGTTTTTAT
CATAATTGCTCTGTATTACAGCTTGAGGTCAGGCATGGTGATTCCACCAG
AGGTTCTTTTATTGTTGAGAATAGTTTTCTATCCTAGGTTTTTTGTTATT
CCAGATGATTTTGCAAATTGCCCTTTCTAACTCAGTGAAGAATTGAGTTG
GAATTTTGATGGGGATTGTATTGAATTTGTTTATTACTTTGGGCAGGATG
GCCATTTTTTACTATATTACTTCTGCCAATCTATGAGCATGGGAGATCTT
TCCATCTTCTGAGGNCTTTCTTCCACTTTCTTTTTCAGAGACTTGGAGCT
TTTGGCACAAAGATCTTTCTCCTTGCTTAGTTAGAGTCCCATGACGTTAT
CGCACGCCTTCTCCGCCCCATTGTGTATCTCTCTCTTTTTTTTCTGTCTT
TACCCTCTACCCCCCTTTTTTTTTTTATTTTACTCCCCGTCTTCTTACTT
CTCGCAGTCTGCTTTTTTTTCCTTTCTTGCTTTCCTTTTTTCCTCCCTCA
TTTTTCTTCATTCTGTATCTCTCTTTCCCCCCTCCCCCTCCTCTCTCCTT
TCTTCTTTCTCTCGCTTTTTCACCCTCTTTTTTCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_m01.b1 MSMg01no428_m01.b1 CHROMAT_FILE:
MSMg01no428_m01.b1 PHD_FILE: MSMg01no428_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:01 2005
         (531 letters)



>mm_chr2_125867026_125867956
          Length = 931

 Score =  973 bits (503), Expect = 0.0
 Identities = 524/531 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaagcagtgcctgctcagaactactgagccatctcttcatcagctgtccaatgacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cagaaagcagtgcctgctcagaactactgagccatctcttcatcagctgtccaatgacct 672

                                                                       
Query: 61  ctaacacagcttttcagagcatgcgcatagaaaagggtttttattttcaacctgcttgga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 671 ctaacacagcttttcagagcatgcgcatagaaaagggtttttattttcaacctgtttgga 612

                                                                       
Query: 121 gtataggaagattagctattgcccagactttttttcgatatgtgctctgtgccatatgtg 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 611 gtataggaagattagctattgcccagactttttttcgatatgtgttctgtgccatatgtg 552

                                                                       
Query: 181 aaatttaaatgtagagatactgtgttgttccatactgatgctacagatgtttccatgcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aaatttaaatgtagagatactgtgttgttccatactgatgctacagatgtttccatgcta 492

                                                                       
Query: 241 ccaaaactatttattctaaaaacaaaacaaaacaaaaagtaaccaaagtgcagccttcgt 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ccaaaactatttagtctaaaaacaaaacaaaacaaaaagtaaccaaagtgcagccttcgt 432

                                                                       
Query: 301 gttgtgtataatcccagccttgcaaagaggacaagcatctagcttccattcctttccact 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 431 gttgtgtataatcccagccttgcaaagaggacaagcatctagcttccactcctttccact 372

                                                                       
Query: 361 agactggaaacatcctttggggacctgcagttctgtccacgctgggttttttagattagc 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 371 agactggaaacatcctttggggacctgcagttctgtccacgctgtgttttttagattagc 312

                                                                       
Query: 421 cactgtcttttcagtctctttcctctgaatttagtagcatggctatgagaaatgaaagcc 480
           |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 311 cactgtcttttcggtctctttcctttgaatttagtagcatggctatgagaaatgaaagcc 252

                                                              
Query: 481 taatttagaagtgtctgtgagttcacagaagcagacagacactgatgtctg 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taatttagaagtgtctgtgagttcacagaagcagacagacactgatgtctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)