Query= MSMg01no428_n18.b1 MSMg01no428_n18.b1 CHROMAT_FILE:
MSMg01no428_n18.b1 PHD_FILE: MSMg01no428_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:10 2005
(527 letters)
>mm_chr2_137929341_137930268
Length = 928
Score = 920 bits (476), Expect = 0.0
Identities = 513/526 (97%), Gaps = 3/526 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgactctgcggttgaaaccaaaaatgggttacctagtgttgaatcaccagcat 64
||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaatttttgactccggggttgaaaccaaaaatgggttacctagtgttgaatcaccagcat 262
Query: 65 ttttttt--acaaagttaatagaatcaaggatatactcactagctgagtgacgcttccct 122
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 tttttttttacaaagttaatagaatcaaggatatactcactagctgagtgacacttccct 322
Query: 123 cgatttgttttcaacatgtgagcagtaattgtagaagtcaacttattcgatgtgttgatc 182
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cgatttgttttcaacacgtgagcagtaattgtagaagtcaacttattcgatgtgttgatc 382
Query: 183 taataataattgatacttctccagtgcttttatcattaaaattaactagccataatatca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taataataattgatacttctccagtgcttttatcattaaaattaactagccataatatca 442
Query: 243 ttgagattctcaagtttattagcaaaacttattattataatttattaaaatacttttgct 302
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 443 ttgagattctcaagtttattagcaaaacttattagtataatttattaaaatacttttgct 502
Query: 303 ctattaacactttaatatactcttaatgttttttccaataagtcaatactcattataaat 362
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 503 ctattaacactttaatatactcttaatgtcttttccaataagtcaatactcattataaat 562
Query: 363 tttgattaaattttccacatccaagtgtcaattcttttcagaacagtctttcaagtatgt 422
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 563 tttgattaaattttccacatccaagtgtcaattcttttcagaacaatctttcaagtatat 622
Query: 423 aatatcccttttttgtttccaaaattctatttatatctgtattatttt-ctgttatgttg 481
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 623 aatatcccttttttgtttccaaaattctatttatatctgtattatttttctgttatgttg 682
Query: 482 gctaaaatttaaaaaatataatttcttcactgaatgctttcatggt 527
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tctaaaatttaaaaaatataatttcttcactgaatgctttcatggt 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 928
Length adjustment: 10
Effective length of query: 517
Effective length of database: 918
Effective search space: 474606
Effective search space used: 474606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_n18.g1 MSMg01no428_n18.g1 CHROMAT_FILE:
MSMg01no428_n18.g1 PHD_FILE: MSMg01no428_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:10 2005
(550 letters)
>mm_chr2_138086593_138087542
Length = 950
Score = 973 bits (503), Expect = 0.0
Identities = 538/550 (97%)
Strand = Plus / Minus
Query: 1 tgctgaggcaaatgggaggtctgaagagccgcctttcctgtctcccaacaggaacactga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tgctgaggcaaatgggaggtctgaagagccgcctttcctgtctcccaacaggaacactga 688
Query: 61 ccactctacaggtgcatggggcttgtcaaatgcaacagtgatttctagttctcaagattc 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 687 ccactctacaggtgcatggggcttgccaaatgcaacagtgatttctagttctcaagattc 628
Query: 121 atcgaatcacgtccttcccatatacactaaagcagcagcagagaggtctttctccaaagc 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 627 atcgaatcacgtccttcccatatacactaaagcagcagcagagaggcctttctccaaagc 568
Query: 181 acagatgccctctccacctcctcactgtgcgacactgagagttctagaacccaacggtac 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 acagatgccctccccacctcctcactgtgcgacactgagagttctagaacccaacggtac 508
Query: 241 ggacgtgttcttcaacaagtaaagtaaacacacttatgaaactacgcaaagaggatgctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggacgtgttcttcaacaagtaaagtaaacacacttatgaaactacgcaaagaggatgctg 448
Query: 301 agagtcagccaaattcctccataaattctagaccttccttcagtggaggtcatggaaaga 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 447 agagtcagccaaattcctccataaattctagaccctccttcagtggaggtcatggaaaga 388
Query: 361 atattctggccagtccaagaagaacacctggcaagtagagtccaggaaatatgcaagaaa 420
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 387 ctattctggtcagtccaagaagaacacctggcaagtagagtcctggaaatatgcaggaaa 328
Query: 421 aagcaacagcctaaactggttgctgcctggtctcaaagaaacctggaacaagtctcactc 480
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 327 aagcaacagcccaaactggttgctgtctggtctcaaagaaacctggaacaagtctcactc 268
Query: 481 agtacctgggcagtttccagctcttctcactctgtccccaatcctaaaactcagatcgtc 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agtacctgggcagttcccagctcttctcactctgtccccaatcctaaaactcagatcgtc 208
Query: 541 attctggnca 550
||||||| ||
Sbjct: 207 attctggcca 198
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
