Query= MSMg01no429_k19.b1 MSMg01no429_k19.b1 CHROMAT_FILE:
MSMg01no429_k19.b1 PHD_FILE: MSMg01no429_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:14 2005
(490 letters)
>mm_chr2_145328887_145329778
Length = 892
Score = 859 bits (444), Expect = 0.0
Identities = 480/492 (97%), Gaps = 2/492 (0%)
Strand = Plus / Minus
Query: 1 catcctagaggtctcctaggacatcttaagagtagacaactttcttggcatgcacgaggc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 771 catcctagaggtctcctaggacatcttaagagtagacaactttcttggcatgcacggggc 712
Query: 61 tctggtttaaatctccagcccaaggatgaatgagtgaattgaat-aaacaagcaaacagc 119
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 711 tctgatttaaatctccagcccaaggatgaatgagtgaattgaataaaacaagcaaacagc 652
Query: 120 caagaagctgctcagttgtggttgaggctgttcacattcacagcaccagaagccatttgt 179
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 651 caagaagctgctcagttgtggttgaggctgtccacattcacagcaccagaagccatttgt 592
Query: 180 tgtggagactggagactttgctatctttggggagaaagtttagtagaggaagaccctgct 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tgtggagcctggagactttgctatctttggggagaaagtttagtagaggaagaccctgct 532
Query: 240 aaatgcttcctcattctttggcttcct-ttgtcttctctctttgcttatcttactccaca 298
|||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 531 aaatgcctccacattctttggcttcctgctgtcttctctctttgcttatcttactccaca 472
Query: 299 tgacttggtgctgcctaagccctgacctggctcttgtgtgtgagaagtggaagacatcca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tgacttggtgctgcctaagccctgacctggctcttgtgtgtgagaagtggaagacatcca 412
Query: 359 cttttcctactgctcctgctggacatctgctgaagggaggtctgggaataggtgggtaaa 418
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 411 cttttcctactgcccctgctggacatctgctgaagggaggtctgggaacaggtgggtaaa 352
Query: 419 cctgggatggtgcagatggtgacaagggtttgtacatttctttgtgtgtgtcagccatac 478
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cctgggctggtgcagatggtgacaagggtttgtacatttctttgtgtgtgtcagccatac 292
Query: 479 tcttttacaacg 490
||||||||||||
Sbjct: 291 tcttttacaacg 280
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 892
Length adjustment: 10
Effective length of query: 480
Effective length of database: 882
Effective search space: 423360
Effective search space used: 423360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_k19.g1 MSMg01no429_k19.g1 CHROMAT_FILE:
MSMg01no429_k19.g1 PHD_FILE: MSMg01no429_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:14 2005
(400 letters)
>mm_chr2_145207704_145208503
Length = 800
Score = 735 bits (380), Expect = 0.0
Identities = 392/396 (98%)
Strand = Plus / Plus
Query: 5 atgcttaacaggtagggaaagagagaaaatgggggatcgggtgacaagggaaattagacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atgcttaacaggtagggaaagagagaaaatgggggatcgggtgacaagggaaattagacc 264
Query: 65 aagaaagcatgcatataatttctgtccctgaatcactggccaaaactgaactacctcact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 aagaaagcatgcatataatttctgtccctgaatcactggccaaaactgaactaccacact 324
Query: 125 aaacaccacaagcttaatgacttcaatatctagtatgtagattttgctgaaatcacggct 184
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaacaccatgagcttagtgacttcaatatctagtatgtagattttgctgaaatcacggct 384
Query: 185 aattaactctgacttaactgtttgagagctgaaatagggtcacaaaacgttgacatcctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattaactctgacttaactgtttgagagctgaaatagggtcacaaaacgttgacatcctg 444
Query: 245 aaatgagctatgtcttaaaaaggtgagatttggtggcaatgaatataaacccgtgacctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatgagctatgtcttaaaaaggtgagatttggtggcaatgaatataaacccgtgacctt 504
Query: 305 aggtgagggggagcctttttcaggtgcatgggatgaagagatgtcttaagagccctgtga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggtgagggggagcctttttcaggtgcatgggatgaagagatgtcttaagagccctgtga 564
Query: 365 tttggggtttccttaggtagtgtgcttatgggctct 400
||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttggggtttccttaggtagtgtgcttatgggctct 600
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space: 309281
Effective search space used: 309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
