Query= MSMg01no429_l19.b1 MSMg01no429_l19.b1 CHROMAT_FILE:
MSMg01no429_l19.b1 PHD_FILE: MSMg01no429_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:19 2005
(509 letters)
>mm_chr2_124945552_124946460
Length = 909
Score = 919 bits (475), Expect = 0.0
Identities = 499/509 (98%), Gaps = 5/509 (0%)
Strand = Plus / Plus
Query: 1 acaattctcaagcagtcactaagttcctctactcttcacctggctgaatgaaggttacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaattctcaagcagtcactaagttcctctactcttcacctggctgaatgaaggttacat 260
Query: 61 gactgtaataaacatttgcttacaatactcttgataattcattacaaaatacattattag 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 gactgtaataaacatttgcttacaatactcttgacaattcattacaaaatacattattag 320
Query: 121 gatattttctttatgtttacttaaagactgaccagagaaaaactaaagatttctttttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatattttctttatgtttacttaaagactgaccagagaaaaactaaagatttctttttaa 380
Query: 181 aaaaacaaactataaaataacctagcaattccattttttttatttaataaaagaaataaa 240
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 aaaaccaaactataaaataacctagcaattccattttttt-atttaataaaagaaataaa 439
Query: 241 accatctcaatatctgaactcatagtcactatatttttcataataactaagataaggaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 accatctcaatatctgaactcatagtcactatatttttcataataactaagataaggaac 499
Query: 301 tgaactaaaagtctgcttacagatcaaagactaattaaagaagggtgggaatgggcatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgaactaaaagtctgcttacagatcaaagactaattaaagaagggtgggaatgggcatat 559
Query: 361 acatattccagatgtatatacacacacacacacacacacatacacacacaggcggacaga 420
|||||||||||||||||||| | | ||||||||||||||| ||||||||||||||||
Sbjct: 560 acatattccagatgtatatatatatacacacacacacaca----cacacaggcggacaga 615
Query: 421 cagaggcacatagagagagagatccagcgttcagaaggaaagcctgccagctacagcaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cagaggcacatagagagagagatccagcgttcagaaggaaagcctgccagctacagcaac 675
Query: 481 ctgaaggacagtgtgctaagtgaagtaag 509
|||||||||||||||||||||||||||||
Sbjct: 676 ctgaaggacagtgtgctaagtgaagtaag 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_l19.g1 MSMg01no429_l19.g1 CHROMAT_FILE:
MSMg01no429_l19.g1 PHD_FILE: MSMg01no429_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:19 2005
(342 letters)
>mm_chr2_125131760_125132501
Length = 742
Score = 605 bits (313), Expect = e-177
Identities = 337/349 (96%), Gaps = 7/349 (2%)
Strand = Plus / Minus
Query: 1 ttctacggcaagtatcatacatgtaacgttgtcttgttttctctgcagatgaaaatgagt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 526 ttctatggcaagtatcatacatgtaacgttgtcttgttttctctgcagatgaaaacgagt 467
Query: 61 gcctgagtgcacatgtctgtgggggagcctcctgccacaacaccctggggagttacaagt 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 466 gcctgagtgcacatgtctgtggaggagcctcctgccacaacaccctggggagttacaagt 407
Query: 121 gcatgtgtcccaccggcttccagtacgaacagttcagtggaggctgccaagacatcaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gcatgtgtcccaccggcttccagtacgaacagttcagtggaggctgccaagacatcaatg 347
Query: 181 agtgtggctcatctcaggccccctgcagttacggttgctctaatactgagggtggctacc 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agtgtggctcatcccaggccccctgcagttacggttgctctaatactgagggtggctacc 287
Query: 241 tgtgtggctgtccaccaggatacttccggataggccaagggtaagtattattcttcctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tgtgtggctgtccaccaggatacttccggataggccaagggtaagtattattcttcctgc 227
Query: 301 cctcagttaatgactctgtaaatat-------acacatacgtatatgtg 342
||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 226 cctcagttaatgactctgtaaatatattacacacacacacgtatatgtg 178
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
