BAC Information

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BAC

Clone NameMSMg01-430B14
Chromosome2 (Build37)
Map Location 60,398,831 - 60,399,181
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1
Downstream geneItgb6, Rbms1, ENSMUSG00000075325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430B14.T7 (MSMg01no430_b14.b1)MSMg01-430B14.TJ (MSMg01no430_b14.g1)
ACCAG522672AG522673
length774887
length of high quality
(start - end)		351 (77 - 427)---
definitionCHROMAT_FILE: MSMg01no430_b14.b1 PHD_FILE: MSMg01no430_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:47 2005CHROMAT_FILE: MSMg01no430_b14.g1 PHD_FILE: MSMg01no430_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACATAGATGCAAGAAAAATTCATTTATATAAGACACAAGTT
TTCTAACCTATTTAATATGTATACTTAACAGATCTCTCCCAGCATTTATT
AAACACTTAAGAGTGTGTTCAAAATATTATTTTATGTTATGATTTAGCAA
CACTGCAGTACTTTCATAATGCCCACCATTGCTGAAGTACTTAGAGGTGA
AAATTCACTGGGCAGAGGGCCAGTTTTAGCAGCAAATTAATAAATGAGCT
TTTTTACCATAGTCCAAACAGCAATTTATATCAATTTAACTCAATTAACA
GCATTCCCAGCACGTGGTGCTCAGCCAGAAAAAAAGTTCCACCCAGTCAG
AAGTTTCCAGCAAGCCTCTGTCTTGGTTGGTTGTGCACAAGATATCTTGG
GTACTTTTCATGCCCCCATTCCCACCTTAAGTGGAACTTCCTATACACAA
CTTAACTATGTGTGCGGATTAGTCGCCCTCCCCCCTTTCGCGCTCCCTTC
TCCCCTGTGTCTTTTCAACCCCCACCCCGTGTTGTTTTCCCTTCCTCTTC
CTTCGTTTCTGCCCTTTCGCTACTCTTTTTTTTTCTTTCTTTTCCTTTTC
CTCTTTCCCCTTCTTTTTTTTCTCTCCCTCTCACCTTCCCTCATCGCTTC
CCTCCCCGTTCCCGTCTCTTAATACCTTTTGAGCTTGTTTTCCACCTCTT
TTTCCAATTTCCCACTTTCCTATT

CGATGCACGCGATAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCCTGTG
AGCTAGGACTGAAGCTGCGTCCGTTCTAATGCCCAGCGTTTGTATCGCTC
CGATATCACTTGCACTTTCGGGTCTTGGCCCGACACGAGACCGCTTCCAT
CAGCACGTCGTCCTTGGATCCTAGTGTCTCCTTGTACTCTCCATTCTCGC
CCGCGCCTGCATCAAAATACCGCCCATTCGAGCTCCACCCCACCACTAAA
GTCCTCACCCAAACTCCTATATCAACCGGATAACGCCAACACAACCCCTT
TCTTTTCCATACAACCCACCTTCCGCCCACACCCGCCACTCAATCGCCTA
TACACCCTACCCAATTACCCCCCAAATAAATAACCCAACCCTACCATCAC
CACCAAACTCCTCCTAACATCGACCCTAATCTACCCTAAACCCTCCCATA
CCCACCCTACTAAACCCATACCCAAAATATCCCATACCACCGACTATCCC
CCCCCCTAACCAACACCCCACGCAACCATCCCAACTTAACCCCATCCCCC
CACTTATATCCCCCCCATATCCACCCACACCCCCCTTTAATCCTTATCCC
CCGCAACACCTCCTACACCCCCCACCCCCCAACCCTTATCCACCTTTGCC
CGTAACCCACCGCCCCCCCCCCAACTAACCCAAATCATCCTTCCCATACA
TCCCCCCTCCACCCCCTAACCAACCAACTATCCATACACCCCCTACCACC
ACAACCCCCTATACCCATCCCCCTTACAAATTCTCCCTTACGAATCCGCC
TCCAATCCTCGACCCAAAAACCCCCCCCTACCACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_b14.b1 MSMg01no430_b14.b1 CHROMAT_FILE:
MSMg01no430_b14.b1 PHD_FILE: MSMg01no430_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:47 2005
         (351 letters)



>mm_chr2_60398631_60399381
          Length = 751

 Score =  663 bits (343), Expect = 0.0
 Identities = 349/351 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcatttatataagacacaagttttctaacctatttaatatgtatacttaacagatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcatttatataagacacaagttttctaacctatttaatatgtatacttaacagatctc 260

                                                                       
Query: 61  tcccagcatttattaaacacttaagagtgtgttcaaaatattattttatgttatgattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccagcatttattaaacacttaagagtgtgttcaaaatattattttatgttatgattta 320

                                                                       
Query: 121 gcaacactgcagtactttcataatgcccaccattgctgaagtacttagaggtgaaaattc 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaacactgcagtactttcataatgcccaccattgctgaagtacttagaggtgaaaattc 380

                                                                       
Query: 181 actgggcagagggccagttttagcagcaaattaataaatgagcttttttaccatagtcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgggcagagggccagttttagcagcaaattaataaatgagcttttttaccatagtcca 440

                                                                       
Query: 241 aacagcaatttatatcaatttaactcaattaacagcattcccagcacgtggtgctcagcc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 aacagcaatttatatcaatttaactcaattaacagcattcccagcacgtggtgctcagtc 500

                                                              
Query: 301 agaaaaaaagttccacccagtcagaagtttccagcaagcctctgtcttggt 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaaaaaagttccacccagtcagaagtttccagcaagcctctgtcttggt 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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