BAC Information

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BAC

Clone NameMSMg01-430E20
Chromosome2 (Build37)
Map Location 155,975,774 - 156,175,079
singlet/doubletdoublet
Overlap geneRbm39, Phf20, Scand1, LOC632394, LOC628707
Upstream geneItch, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik
Downstream geneLOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430E20.T7 (MSMg01no430_e20.b1)MSMg01-430E20.TJ (MSMg01no430_e20.g1)
ACCAG522828AG522829
length785848
length of high quality
(start - end)		386 (50 - 435)348 (78 - 425)
definitionCHROMAT_FILE: MSMg01no430_e20.b1 PHD_FILE: MSMg01no430_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:05 2005CHROMAT_FILE: MSMg01no430_e20.g1 PHD_FILE: MSMg01no430_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,174,697 - 156,175,079)(155,975,774 - 155,976,121)
sequence
NTTTCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCTCGAAGTTTCCCAGGAGGACTGCCATATAAACCTTAATGTTA
AAGTCTAGATTTTAGTAAAGCACTATAAGGAACAAACCTAGCTCCACTCA
CTGCTGGCCCAGGGGTGCCCTACCTGCACCCACACTGTGGCCTCCACATT
CCTTCCTCAGGAGCCCCAACTTTCCTGGAATCGCTTGTGTGGCACGTAAC
TGCCACACAGGTTTTGCAATGAACCAATCTGTAGGGAGAGACAGGAATTT
CCCTTTTAAAAAGTACTCTAGGTATGTTGCAGAGACTGAAGGAATGGCCA
ACCAATAACCAGCCCAGCTCGAGACCCATCCCATGGGTGAGCACCAATCC
CCAACACTATAACTGATACTCTGTTATGCTTGCAGACAGGAGCATGCTAT
CCTCTGAGAGGCTCCACCCAAGGGCTGACTCTGACCAATACGAACACCCC
CAGCCAAACCAGTATATGTAGCTTGTGCATTCCTATGAATAACCCGTAGC
CCCTCTGCTTTCCCCGCCTCCTTTCCTAATCTCTCCTCCAAAACACACTA
TCTTTTTTTTCTGTTTTCTTGTGCTCCTACATCTTAACCCCTCCTTCCTC
AACCCTTCTATTTTGATCTCCCTCTCTTTCTAATCTATTAACCACTCGTT
CCTTATTCTTTTTTCCCCCCTCTTCTTCCTTTCACTTATCCCCTTCTTTA
TTTCTCATTTTTTTTATTCCCCTCCCCCATACATT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATATAAAGCAGCAAGCTAAACC
CTTTTAATAACCACTTTGAGGAAGTAACCAAATGTTGAACTTTGGAATCC
ATAGACTTATGTAGCCAGAGGGATACATATACAAAAATTATTAAATTATT
AACATCATACATTAGTAAAAATAGGTAAACTAAAAGCAGATAAAATTATC
ATAGGTTAGAAGCCTGCATGGACTACAGTACTGCTACTAATTGATCACGA
GGCCAGCTCTAACAATTGATGCTAATACCCTGTTGGAATTTAAAAAAACA
ACAAAAAAGAGGACTTGTGATTTATCAGTGGCAGAACTGCCTGGCATGCA
GGGCTCAGGGGCCTAGGTTTTAACTCTATGACAGAAAACAATCCTGTAGT
AGACAAATTTTAACTTGCTATTCCCAATAAAGGACCTGCCTTCTGTTACC
AACCTAATTGGTTCTATTCCTTGATGTGTCCTTTCGGAACTCCCTTGGAT
GACTAGTGGCTGCATTAAATTTGCACTATGCTACCCATTTCTTTAAATTA
ATACACCTCTCCTTTAACTTTCCATCCTGTGTTCTACGCCCTATTTTTTT
GACCTCGCATTTATTCCTCTTCGTTATATATTCCTCGCACTGTGTCCGTC
CTCTCCCTTCCCTCCTCCCTTCTTTTAAATTCCTACCTCCCTCCCCCCTC
CCTTATCTTTTTTTCATCCGCTTACCCATTTTACGCCCTAACCTCTTATT
AACTCCATTTTATCGCCCCCTTTCCATCCCTATTTCCCACACCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_e20.b1 MSMg01no430_e20.b1 CHROMAT_FILE:
MSMg01no430_e20.b1 PHD_FILE: MSMg01no430_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:05 2005
         (386 letters)



>mm_chr2_156174617_156175402
          Length = 786

 Score =  688 bits (356), Expect = 0.0
 Identities = 377/386 (97%), Gaps = 6/386 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctcgaagtttcc-c--aggaggactgccatataaaccttaatgttaaagtctaga 60
           ||||||||||||   || |  |||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gaattctcgaag---ccacagaggaggactgccatataaaccttaatgttaaagtctaga 407

                                                                       
Query: 61  ttttagtaaagcactataaggaacaaacctagctccactcactgctggcccaggggtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttttagtaaagcactataaggaacaaacctagctccactcactgctggcccaggggtgcc 347

                                                                       
Query: 121 ctacctgcacccacactgtggcctccacattccttcctcaggagccccaactttcctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctacctgcacccacactgtggcctccacattccttcctcaggagccccaactttcctgga 287

                                                                       
Query: 181 atcgcttgtgtggcacgtaactgccacacaggttttgcaatgaaccaatctgtagggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 atcgcttgtgtggcacgtaactgccacacaggttttgcaatgaaccaatctgtagggaga 227

                                                                       
Query: 241 gacaggaatttcccttttaaaaagtactctaggtatgttgcagagactgaaggaatggcc 300
           ||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||
Sbjct: 226 gacaggaatttcccttttaaaaagtactctagggatggagcagagactgaaggaatggcc 167

                                                                       
Query: 301 aaccaataaccagcccagctcgagacccatcccatgggtgagcaccaatccccaacacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 aaccaataaccagcccagctcgagacccatcccatgggtgagcaccaatccccaacacta 107

                                     
Query: 361 taactgatactctgttatgcttgcag 386
           ||||||||||||||||||||||||||
Sbjct: 106 taactgatactctgttatgcttgcag 81


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no430_e20.g1 MSMg01no430_e20.g1 CHROMAT_FILE:
MSMg01no430_e20.g1 PHD_FILE: MSMg01no430_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:05 2005
         (348 letters)



>mm_chr2_155975574_155976321
          Length = 748

 Score =  665 bits (344), Expect = 0.0
 Identities = 347/348 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatataaagcagcaagctaaacccttttaataaccactttgaggaagtaaccaaatgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatataaagcagcaagctaaacccttttaataaccactttgaggaagtaaccaaatgttg 260

                                                                       
Query: 61  aactttggaatccatagacttatgtagccagagggatacatatacaaaaattattaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactttggaatccatagacttatgtagccagagggatacatatacaaaaattattaaatt 320

                                                                       
Query: 121 attaacatcatacattagtaaaaataggtaaactaaaagcagataaaattatcataggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaacatcatacattagtaaaaataggtaaactaaaagcagataaaattatcataggtt 380

                                                                       
Query: 181 agaagcctgcatggactacagtactgctactaattgatcacgaggccagctctaacaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaagcctgcatggactacagtactgctactaattgatcacgaggccagctctaacaatt 440

                                                                       
Query: 241 gatgctaataccctgttggaatttaaaaaaacaacaaaaaagaggacttgtgatttatca 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgctaagaccctgttggaatttaaaaaaacaacaaaaaagaggacttgtgatttatca 500

                                                           
Query: 301 gtggcagaactgcctggcatgcagggctcaggggcctaggttttaact 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtggcagaactgcctggcatgcagggctcaggggcctaggttttaact 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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