BAC Information

Click to search

BAC

Clone NameMSMg01-430K02
Chromosome2 (Build37)
Map Location 26,064,226 - 26,064,593
singlet/doubletsinglet
Overlap genenone
Upstream geneA730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3
Downstream geneQscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430K02.T7 (MSMg01no430_k02.b1)MSMg01-430K02.TJ (MSMg01no430_k02.g1)
ACCAG523079AG523080
length770812
length of high quality
(start - end)		377 (45 - 421)246 (81 - 326)
definitionCHROMAT_FILE: MSMg01no430_k02.b1 PHD_FILE: MSMg01no430_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:34 2005CHROMAT_FILE: MSMg01no430_k02.g1 PHD_FILE: MSMg01no430_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGAGTGCTGTAATTGCGGAGGCTAGTACGACTCACTATTTCCAGAGGATC
CGCGGAATTCTCCAAATCCCTTTCTCCCATCTAGTTTGCAGACACAACTC
TGAAGTTCTAAGAATTTTTTGTATAAATAAACTAGAGGCATTCGGGAAGA
CAGCCTAAAGGTCAGGCAGAAAGTGAAGAGAGAATGGACTATGCTGAGAC
CTGCATCCTCAGATTGTCCCTGAACCCACAGAGCCTGGGAGGACCAGCCA
GTCAGCTAGAAAGCTGTTGAGCCTCTCCCCAAATTTCCCTCCCATCTGTG
CCCAGCCTGGGGCAGATTGCCCTGCAGGCACCTGGGAACTTCTGCTCAGG
ACCCTTCAGCTCTTCAGTAGCTGGTGGGTTTGCATGCATGACCCTTTTCT
GGAAATAGGGGTTGGAGAAAAGGGACTAAAATCTGCCTTCAGAGTACTGG
ATGCAGGTGGTTGAGTTCGTACCTGTACGTCCCTGACTTGTGTCTGTTTT
TTTAATCTCTTCGCATCCACCAACCTTTTTACGCACTGTTTTATCACCTC
CTTCTTCCGTTTCCACCTTTACTACCTCCTAACCTCCAATTTCTTTTTCC
ATTTCTTTCCCCTTTTTTCCTCCTTCCCTATCCCATTTTTTTCTTTTCTC
TTTCTTTCTTTTCTATTTGTTTTTTCTTCTATTTTCCTCTTTTACCTTCT
TCTTTCCTTTTCCCCTTTCCCCCTTTATGCCCCCTTCTCCCTTCTTTTTT
CCCTTTCCTCCCCGCCCTTN

NNTTCGATGCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGATAGCAACTCAGTTGGG
GCAGAAACCTAGAGGCAGGAGCTGATGCACAGACCATGGCAGGGTGCTGC
TTATTGGCTTGCTCCCTATGGCTTGCTGAGTCTGCTTTCTTATAGGACCT
AGGATCACCAGCCCAGAGATGGCACCACCCACAGTGGGACCTCCCCCATC
AGTCACTAAGAAAATGCACTACAGCTAGATCTTATGGAGGCTTTTTTTTT
TTCAGTTGAGATTCCTTCCTTTCATATGACGTTTGCTTGTGTCAAGATGA
CCCATAGCGACCTGCACACTGGTCCTCCTGACTTCATGTGCCATGGATCT
TTGTGTTATCCTACCTCCTCAATGCTTTTTATCTGATCCATGTTACTTTA
CTTCATACCTTTTTTTTGTCTTTTTTGCCCTGTTATTTGTCCTTTTCTCT
CGTCTTCTTCTAATTCTCTTCATCTCTTACTCTTCTTTACTTTCCCATCT
CTCCTCTTCCCTCTTTTTCTCCTTTTCTTACCCTACCCCCCATCTTCACC
CCTTTTATTGTCTTCCCTTTTCTCTCCCTCTCCTTATTACTCTCCCTTTT
CCCTTCCTTCCCTACCCTCCTTCCCATTCTTTTATCCTTTCCCCCCTCCT
CTTCTCCTTCTCTTTATCTCCTTCTCTATGTTTTCTTTTTCTTCTAATTC
TCCATATTACCTCTTTTTATACCCTCTCTCTTTCCCCCCTTATATTCTCG
CTTCTTCTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_k02.b1 MSMg01no430_k02.b1 CHROMAT_FILE:
MSMg01no430_k02.b1 PHD_FILE: MSMg01no430_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:34 2005
         (377 letters)



>mm_chr2_26064017_26064793
          Length = 777

 Score =  659 bits (341), Expect = 0.0
 Identities = 362/369 (98%), Gaps = 2/369 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  ggaattctccaaatccc-tttctcccatctagtttgcagacacaactctgaagttctaag 68
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ggaattctccaaa-cccttttctcccatctagtttgcagacacaactctgaagttctaag 519

                                                                       
Query: 69  aattttttgtataaataaactagaggcattcgggaagacagcctaaaggtcaggcagaaa 128
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 518 aattttttgtataaataaactagaggcattcgggaagacagcctaaaggtcaggcagata 459

                                                                       
Query: 129 gtgaagagagaatggactatgctgagacctgcatcctcagattgtccctgaacccacaga 188
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 458 gtgaagagagaatggactatgctgagacctgcatcctcagattgtctctgaacccacaga 399

                                                                       
Query: 189 gcctgggaggaccagccagtcagctagaaagctgttgagcctctccccaaatttccctcc 248
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 398 gcctgggaggaccagccagtcaactagaaagctgttgagcctctcaccaaatttccctcc 339

                                                                       
Query: 249 catctgtgcccagcctggggcagattgccctgcaggcacctgggaacttctgctcaggac 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 catctgtgcccagcctggggcagattgccctgcaggcacctgggaacttctgctcaggac 279

                                                                       
Query: 309 ccttcagctcttcagtagctggtgggtttgcatgcatgacccttttctggaaataggggt 368
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 278 ccttcagctcttcagtagctggtgggtttgcatgcatgagccttttctggaaataggggt 219

                    
Query: 369 tggagaaaa 377
           |||||||||
Sbjct: 218 tggagaaaa 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |