BAC Information

Click to search

BAC

Clone NameMSMg01-430P08
Chromosome2 (Build37)
Map Location 159,191,447 - 159,191,745
singlet/doubletsinglet
Overlap genenone
Upstream geneA930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneLOC100043689, Gm826, Mafb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430P08.T7 (MSMg01no430_p08.b1)MSMg01-430P08.TJ (MSMg01no430_p08.g1)
ACCAG523328AG523329
length831813
length of high quality
(start - end)
368 (50 - 417)338 (80 - 417)
definitionCHROMAT_FILE: MSMg01no430_p08.b1 PHD_FILE: MSMg01no430_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:04 2005CHROMAT_FILE: MSMg01no430_p08.g1 PHD_FILE: MSMg01no430_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTGATGCCTACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTTAGGTAAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAATTGGACATAGTACTACCGTATGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCCGAATCTGGATAGAAACTA
GATGCCTCTCACTCGAACGAAGGTATCTGAAAATGGTGGACCTTTTTTCC
ATGGAGTTCTTTCCCGTTTTTTCCTAACACGGTTTTTCCCACCTGTCTCC
TTTCTACGTTTGGTATTCGGACTGCCTTCTTTTCCTCCTGCTGCTCCCTC
CCTTTTTCTTTTCCCTCCTCTCTCCTCTTGTTTCTCCTTGTTTCCTGCTG
CTCAATTTTATTCTACTTTCTACTTCCATGCGCATATTTTCATCATATCT
TTCTTTGTTCTCCTTTTTTTTTTATGTTTTTTTCTTCCCCCTGTTTCCTT
CTGAACTTGCTTCTCCCTTTCTCATTTATCCTGTCTCCTCCACTATCCCT
TTTTTTCCCCTTCCTCTCTATCCCTTGTTTA
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACTTCTACTTTCAATGAGC
TGAGGTAGGCCTCTAAATTATCACAATGATTAATACTTCCATGAAAGGCC
TCAAATCATCTATGTTGCCTTGTTCTATTTATGTTAAACATCCAATCTGA
ACTCAAATAGCAAGGGTGTTCTATAGTTCAAGACCATTGTTCCATCTGCA
ACACAAACTCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTCTCTC
TCTCTCTCTCACATACACACACACTCACACACACACATACACACACACAC
AGACAGGGAGAGAGAGTGTGTGTGCAACTTATAGAGAGATCTACATTAGA
CCCTCCTCCACGTCTTCATCCCATATCCCTATTCCCCTTCGCTCTCTTTT
CCTCCTATTCATCTAACTCCTTCATTTCTTCATATCCCTTCCTTCCTTTC
ATTCTTCCCCATTTCCTCACAACCCCTTTTTCTTTTTCCTTCCTTCACCT
CTTTCTTCCTCCCCCCCCAATCTTTTCCACCTTTCCCCTTACCCTCCTCT
CTCTTCCTATCTTCTCAATCTTCCTTCATACCTTTCCCCCGCTCCCCCTT
ACATTCTCTCTCCTTACCCCCCTTCCTCTAAAACCCCCCTTCTATTCCCC
TTATCTATCCTCCCTCTCCATACCCCCCCATTCCTACATCCTATTTACCC
CCCCATCCTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_p08.g1 MSMg01no430_p08.g1 CHROMAT_FILE:
MSMg01no430_p08.g1 PHD_FILE: MSMg01no430_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:04 2005
         (338 letters)



>mm_chr2_159191365_159192102
          Length = 738

 Score =  491 bits (254), Expect = e-143
 Identities = 298/338 (88%), Gaps = 39/338 (11%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacttctactttcaatgagctgaggtaggcctctaaattatcacaatgattaatacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacttctactttcaatgagctgaggtaggcctctaaattatcacaatgattaatacttc 322

                                                                       
Query: 61  catgaaaggcctcaaatcatctatgttgccttgttctatttatgttaaacatccaatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgaaaggcctcaaatcatctatgttgccttgttctatttatgttaaacatccaatctg 262

                                                                       
Query: 121 aactcaaatagcaagggtgttctatagttcaagaccattgttccatctgcaacacaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactcaaatagcaagggtgttctatagttcaagaccattgttccatctgcaacacaaact 202

                                                                       
Query: 181 ctctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct: 201 ctctcttctcttctcttctcttctcttctcttctcttctcttctct-------------- 156

                                                                       
Query: 241 ttctcttctcttctcttctcttctctctctctctctctctcacatacacacacactcaca 300
                                    |||||||||||||||||||||||||||||||||||
Sbjct: 155 -------------------------tctctctctctctctcacatacacacacactcaca 121

                                                 
Query: 301 cacacacatacacacacacacagacagggagagagagt 338
           |||||||||||||||||||| |||||||||||||||||
Sbjct: 120 cacacacatacacacacacagagacagggagagagagt 83


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)