BAC Information

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BAC

Clone NameMSMg01-431N15
Chromosome2 (Build37)
Map Location 82,031,938 - 82,032,407
singlet/doubletsinglet
Overlap geneZfp804a
Upstream geneLOC100040704
Downstream geneLOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431N15.T7 (MSMg01no431_n15.b1)MSMg01-431N15.TJ (MSMg01no431_n15.g1)
ACCAG524014AG524015
length1,129761
length of high quality
(start - end)		---470 (64 - 533)
definitionCHROMAT_FILE: MSMg01no431_n15.b1 PHD_FILE: MSMg01no431_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:21 2005CHROMAT_FILE: MSMg01no431_n15.g1 PHD_FILE: MSMg01no431_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTGGCTCTATTAGCGCCGCATATATTTTCTCATCAGAAGAGGGGGAGAG
TGGCCATAGACTGTAAACTCCACAAAACACGCGCATCAACATACAATACA
CTCTAGACCTCTAGCATAGTACGATACGTACGGGTAGGTCAGATATAACG
TAGGATAGTGAGAGAGGTAGAGATGAACTATACGTGATATGGTAAGGAGT
AGAGACGGAGGAGCGTCAAGTCGAGAGGATGGTATAGATCAAACGTAGTC
TCGCCCCAGCATAGCGTGAGATGTGCTGTTAAGTCTCCGGATCTTGCGTT
AGCGCAGAATCGGCCATAATAACCGCAAGACGTTCTCGCATAGTCTGTTT
AGACCATAGTGATTACACAGAAGACCGTAATAACTAATTAAGTAATTATG
TCGTGAGTCATGCTACCTTGGATTACCACACATTCGCCCCCACAAACCGA
TTTTTGTGTGCGTATCTATACACGGAACGCAATATAAGAATGCGATGTCG
TATGTCACGTCTGATATTGCCAGTGACATGTTCCTCATTCTCCACCCTTT
TAATATCCACCTTCTCGTTTTCGTAGTCTTAGCGTATTCGGCCTATGACA
CTCAATAGATTGTGAATGGTAACATGTTATGTGAGCGCATCCATACAACC
AGGAGCATAGAGTAGATGCTCGGGACGGAGAAATGTCTTATAACGTGTAT
ATCTGTCTCCAGCAACACGCGCATGTTTACGTGTTATATTATATTAACAG
ACCAAGACGAGCGTAACTTCTTCACTTTAATTCGCGTATATGACGTCGCG
CGTCGCCCGTCCGCTCATCTCCGAGCCTTAACTAATACGAGATATATAGC
TGGAATGTCGAAGCCTCAGATCATATTATTTTTTATAGTTCGCGCTCCTC
CGACATATCGCGCCGTTCAGATATAATCGCTCATAANCGCCCACCTCATA
TAGATACAATATAATACGCCGTCGTATGTCCATATAATAACGTTAAGTCT
ATTTCAACGTCGCTCACGATATTTATCGCATCTATGTACGTAGGACTCAA
TAGCGATATTACGCTATTACGTAAGGTCGTCCACTTACCGTACTACATGA
CGTATCAGCGCGCTCCTCCACATCACCCG

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAAATCTAATACTGAGCTCATGTCATTTTTCTGTTCT
TTCTCATTAAGTACTATTGATCTTTAAATAGATATTCAAGGCTAAAGGCA
TAGCTAGGAAATTGAGTTGTGTAATAAGTGCTTTTCCAAGTCTGTATTGT
CATATTGAAAACTTAATTATAAACAACACAGGTTACACGGGGGCCATCCT
GCTCATCATCAAATCATTCAAACAGATCGAAACTAATCAAAACCATGAAA
CTTGTTTTCTTCAATTTCAAAAAGCAGCATTATACTAAGATGTCAAGTTG
GGTTTCTTGTAACTGTCTGCTAATGCTCTTTATTCCCCGCTTGGCTTCTT
GTCAAGCTGGGATTAGACAGGTGCTTTTTCCTGTAACTTTTTGGAAAATA
AGAAATCTAAGTTCAATTGAAAATTTCTATTTATCAGTTCTTCATGCTGA
GAATTGTGTTGTTCACTGCATTCCACTTTTAAAAAGGTCCTTTGTGAAAA
TCTTTTCAAAATATAGCCTCATCATACCTTTCTCCCCTCCTTCCTTTCAC
TCAAATAAAATGGTAAGCAATTAAATCAGGTTGCTTAATTTTGGTGATCT
AAACTTTCCCAGTTGAAACCAAAGGGTTTTAAAACCACTTTTAAAGAACA
AGGTGGCAAATGAACCCCCAATTTTTGGTCCGGGATTTTATTTTCCCCCC
CCCTTTGGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_n15.g1 MSMg01no431_n15.g1 CHROMAT_FILE:
MSMg01no431_n15.g1 PHD_FILE: MSMg01no431_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:21 2005
         (470 letters)



>mm_chr2_82031738_82032607
          Length = 870

 Score =  901 bits (466), Expect = 0.0
 Identities = 469/470 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatctaatactgagctcatgtcatttttctgttctttctcattaagtactattgatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 caaatctaatactgagctcatgtcatttttctgttctttctcattaagtactattgatct 611

                                                                       
Query: 61  ttaaatagatattcaaggctaaaggcatagctaggaaattgagttgtgtaataagtgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttaaatagatattcaaggctaaaggcatagctaggaaattgagttgtgtaataagtgctt 551

                                                                       
Query: 121 ttccaagtctgtattgtcatattgaaaacttaattataaacaacacaggttacacggggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttccaagtctgtattgtcatattgaaaacttaattataaacaacacaggttacacggggg 491

                                                                       
Query: 181 ccatcctgctcatcatcaaatcattcaaacagatcgaaactaatcaaaaccatgaaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ccatcctgctcatcatcaaatcattcaaacagatcgaaactaatcaaaaccatgaaactt 431

                                                                       
Query: 241 gttttcttcaatttcaaaaagcagcattatactaagatgtcaagttgggtttcttgtaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gttttcttcaatttcaaaaagcagcattatactaagatgtcaagttgggtttcttgtaac 371

                                                                       
Query: 301 tgtctgctaatgctctttattccccgcttggcttcttgtcaagctgggattagacaggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 370 tgtctgctaatgctctttattccccgcttggcttcttgtcaagctggaattagacaggtg 311

                                                                       
Query: 361 ctttttcctgtaactttttggaaaataagaaatctaagttcaattgaaaatttctattta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctttttcctgtaactttttggaaaataagaaatctaagttcaattgaaaatttctattta 251

                                                             
Query: 421 tcagttcttcatgctgagaattgtgttgttcactgcattccacttttaaa 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tcagttcttcatgctgagaattgtgttgttcactgcattccacttttaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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