BAC Information

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BAC

Clone NameMSMg01-432B06
Chromosome2 (Build37)
Map Location 16,599,208 - 16,759,970
singlet/doubletdoublet
Overlap genePlxdc2
Upstream geneLOC625457
Downstream gene4930515L03Rik, LOC383665, Nebl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432B06.T7 (MSMg01no432_b06.b1)MSMg01-432B06.TJ (MSMg01no432_b06.g1)
ACCAG524185AG524186
length786776
length of high quality
(start - end)		509 (38 - 546)424 (68 - 491)
definitionCHROMAT_FILE: MSMg01no432_b06.b1 PHD_FILE: MSMg01no432_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:40 2005CHROMAT_FILE: MSMg01no432_b06.g1 PHD_FILE: MSMg01no432_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,759,676 - 16,759,970)(16,599,208 - 16,599,631)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCT
AATTAGCACAGACTGGCTTCCAGTGAGTTTTTATCTTCACCTCTTCAGAG
CTGGAGTACAGGGTAGGTTTGGAGGGGCACAAATCCCAGAGCTCTAACAT
AAGTTCTGGGGCCCAGCTCAGGTCCTCAAACCACCTGGTGAACACTTTAC
AGAGTGAACTATCTCCCCAGCCTTTTGCTTTCTATGGGGTAACAATATTC
ATTTTCTTGGAACCCAGATTTACACAAGATCAGATCTTCATCTTGGGTTC
AGAATCGCATCCAAATGACATTTATGTTTTAGTTGTGTCTTGCACGTGCC
CAACTGGCCAGGAAGAACGACGCTGCAACAGAAGAAACAGGATCCTTCTG
CACACGTGTATTCAGTCCTGTTTCTTCTTGTTTATATCTCCCTTGTTTAT
ATCTCCCTTGTTTATATCTCCCTTGTTTATATCTCCCCCGAACCCTGGGC
CTCTCACTCTTTTATACTCTCAGTTCCCATCCACGCACAGCAGGCCACGC
CACCTTACCAGGCACGCAGCTTCAGCTAATCAGGGCAGCAGGGGCATATC
TCCATCCAAAAGGATTCACCAGTATTCCTGGTAGACCTGCGCAGTTCTCA
AGAAGTTTGGTGGCTTATTTGAAGTAAGTCTTGTGCTGAGTCTAACAATT
TATATGGCGTCCCCGGGCGCCCTTTGGTAATGGCGATAAACCCGTTTTTT
ATAAGTTGTGTTTTTTTTGTACACCGAATCAGGCCN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAATAGGG
TTATTTGATTTTTTTGTAGTCCATCTTCTTGAGTTCTTTATATATATTGT
ATATTAGTCCACTATCTGATTTAGGATTGGTAAAGATCCTTTCCCAATCT
GTTTGTAGCCTTTTTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGA
AGCTTTGCAGTTTTATGAGGGCCCATTTGTTGATTCTAGATCTTACAGCA
CAAGCCATTGCTGTTCTCTTAGATCTAGAACAGCAACAGTATTCTTCAAT
GTCTTCAAAATAATTAATATTAACATTGCTTAAATCTTTATGAGTTTCAG
TATAAAAAGTCAGTATGCCTGGTTCATGATAGGAAATATGACTCTATTTA
TAATTGTAAAAACTTTCCTAATATAGGAGTTACATATTTGTTGATATATC
AGATACTACAAAATCTTTCATTAAACTCCAGTTATGGTGTTCCATGGTAA
ACTTTGGTTGGACCACTTACACGTGAACGAGAATAGAAGTTATCTTTTTT
TTCAGAATTCAAAATACCTGTCGTTCTCCTGTTTTTTCCTCTTAGTGGAT
GGGCTTATTTGTCCATATTCTTTGTAGTGTTATTTACCTACTTACTCTTT
CCTATATGTATGAGTTCGGCTCCTCTATTAATGAGTTATGTGTTTTAACC
GATTTCGTCGGTAGATACGCATCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_b06.b1 MSMg01no432_b06.b1 CHROMAT_FILE:
MSMg01no432_b06.b1 PHD_FILE: MSMg01no432_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:40 2005
         (509 letters)



>mm_chr2_16759291_16760199
          Length = 909

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattccctaattagcacagactggcttccagtgagtttttatcttcacctcttcagagct 65
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aattccctagttagcacagactggcttccagtgagtttttatcttcacctcttcagagct 621

                                                                       
Query: 66  ggagtacagggtaggtttggaggggcacaaatcccagagctctaacataagttctggggc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggagtacagggtaggtttggaggggcacaaatcccagagctctaacataagttctggggc 561

                                                                       
Query: 126 ccagctcaggtcctcaaaccacctggtgaacactttacagagtgaactatctccccagcc 185
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 560 ccagctcaggtcctcaaaccacctggtgaacactttacagactgaactatctccccagcc 501

                                                                       
Query: 186 ttttgctttctatggggtaacaatattcattttcttggaacccagatttacacaagatca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttttgctttctatggggtaacaatattcattttcttggaacccagatttacacaagatca 441

                                                                  
Query: 246 gatcttcatcttgggttcagaatcgcatccaaatgacatttatgttttagttgtg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gatcttcatcttgggttcagaatcgcatccaaatgacatttatgttttagttgtg 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no432_b06.g1 MSMg01no432_b06.g1 CHROMAT_FILE:
MSMg01no432_b06.g1 PHD_FILE: MSMg01no432_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:40 2005
         (424 letters)



>mm_chr2_16599008_16599831
          Length = 824

 Score =  797 bits (412), Expect = 0.0
 Identities = 421/424 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctgtaccccatttttaatagggttatttgatttttttgtagtccatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgtaccccatttttaatagggttatttgatttttttgtagtccatctt 260

                                                                       
Query: 61  cttgagttctttatatatattgtatattagtccactatctgatttaggattggtaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttatatatattgtatattagtccactatctgatttaggattggtaaagat 320

                                                                       
Query: 121 cctttcccaatctgtttgtagcctttttttttgtcttattgacagtgtcttttgccttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttcccaatctgtttgtagcctttttttttgtcttattgacagtgtcttttgccttac 380

                                                                       
Query: 181 agaagctttgcagttttatgagggcccatttgttgattctagatcttacagcacaagcca 240
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 381 agaagctttgcagttttatgaggtcgcatttgttgattctagatcttacagcacaagcca 440

                                                                       
Query: 241 ttgctgttctcttagatctagaacagcaacagtattcttcaatgtcttcaaaataattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgctgttctcttagatctagaacagcaacagtattcttcaatgtcttcaaaataattaa 500

                                                                       
Query: 301 tattaacattgcttaaatctttatgagtttcagtataaaaagtcagtatgcctggttcat 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 tattaacattgcttaaatctttatgattttcagtataaaaagtcagtatgcctggttcat 560

                                                                       
Query: 361 gataggaaatatgactctatttataattgtaaaaactttcctaatataggagttacatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gataggaaatatgactctatttataattgtaaaaactttcctaatataggagttacatat 620

               
Query: 421 ttgt 424
           ||||
Sbjct: 621 ttgt 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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