BAC Information

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BAC

Clone NameMSMg01-432L08
Chromosome2 (Build37)
Map Location 70,440,457 - 70,440,900
singlet/doubletsinglet
Overlap genenone
Upstream geneBbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b, LOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1
Downstream geneLOC100039766, Gorasp2, Tlk1, Mettl8, 4833418A01Rik, Cybrd1, Dync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432L08.T7 (MSMg01no432_l08.b1)MSMg01-432L08.TJ (MSMg01no432_l08.g1)
ACCAG524662AG524663
length8021,665
length of high quality
(start - end)
450 (36 - 485)---
definitionCHROMAT_FILE: MSMg01no432_l08.b1 PHD_FILE: MSMg01no432_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:32 2005CHROMAT_FILE: MSMg01no432_l08.g1 PHD_FILE: MSMg01no432_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCTC
TGCTGCATACCACTTAGAAGATAGTCTTATTTCATGAGCCTGGATGGTGG
ACTGCAAACTTATAGGCACTTGTACCTGAAAGGCTGCAAAAGCTATGGAA
ATGGCCAGAATTCAAATAAGGACAAGGGACAAAAAAACCCACAAGAAGGA
TTTTGAAGAATAGCAAAAACAAAGAATAATGTACCTTTCTGATTACTCCC
ATGGTCCAGTTTGTTTAGTCAATCTCAGTGCTGTCTATAGGGGTCGCTTC
TCTACCTGTGCTGTAGACAAGGACTTGTCTCTAATGAATAAGACCCTGTT
TATAGCTTAACTGAATGATGCAGGAACTGAGCCCTCTTTCCTGATGATCC
AGCACCTAAACACATTTCTTAAGAAGCTAAGTTAGGACCACTGTACAAGC
ACACATAATAAGGAGCTGTTATTCTGATGCCAGATGACCTGAGTTCCAAA
CTAGATAGGATATTTGTCTTGCACACTTCACACTGCAACCTTGGAGCCCT
ACACTGTCCCCTGGAGACTGGGAATAGGATGGATAATTTCTGTTTATTGG
TTATGCTCTTCCCCCTTATCATGCTCCTTCGATTCTTCATAACCGGCCCC
CCCTTTTTTCTCTTTCCCTTTTTCTTCCGCGACCATCTCCTACATCCCAC
CCCAGATCCTTCTACTTCCCTATATACCCCTTCAATTCTACTAACTTCCA
CATTATCTATTCTCACCATCCCTCATAACTGTATAATTTCCTACCTATTA
TN
TCCATTGGGGNNGTGNGATCNCTGTGTAGGGTNGTACCCCGTNAGATATA
GGTATATCTAGTAGTGATAACTACTAATAATAGGTCTAGACGAACATGCG
TCTCGTATATGTATTATTGTGATGTAGATTATTTTNCGTAGTAGTTTCAT
TCGAGACTTGTGATTGTTGAATTGTATAGCATATAGTGTGATTGTATGAA
TTTGANATTTCTGCTATGCGATAGNTTATGATATATGATGTATNTGTAAG
TAGGNTGTGAACAATGACTCGTGAAANGCTGTATATAGTTGATGTTGTGC
TGTATATCTATGTGTGGATACTTCGCATGACGGGGTGTCGAGTAACTGCG
AACAGTAGATACGAAGTACATAGTTTACTATACACGACACTATGTCTAGT
GTCTTGTGTGTTGTGCTATATAGTTGTTATCATCTGTGTAGTGAGATTTT
TGTTAATCGATTGCNAGTCTGTACTCGCGGTTTGTCCTGGTTGTGATAGA
TGTTCGCGCATATAGNTGATATCACGCACTAAAGAATACAATACGACGAT
GACATAAGGCGATATATATATATCAGTAGTATATAACTATGATATCGAGT
TGCTGATATATATTACGCAACAGACTTGTCACATATGAGANGACATAATA
TAGATGTTAGAAGAAGATGATGAATATAGACATACATATGATGAGTATAG
TTTCGGAGTAGTGTGATCTTATTATATTATATAAGTATACGATATATCTG
TGACTTAAGATGCACGTAGTCAGTATAAATTGGGTTATGTATATTATTAT
GTACTTCGTAGTTGTAGACTATTGATGTATATACTTATACTGTACTCGAC
ATGTTTTCTTTATCGCTGTTGTGTANTGTTAAGTGCGTTGATCGATACTN
CTTGTCGAGGCATTTCGTATCCTACTTNCTCTATATAGTACTATCGTATG
TGATTATTGAGATATTATACATCATATTGCATGTGTTATTATCTGACATA
TATCGATCTGTGTATAGGTATCTCATCGATATATTTCGTATGTCTCACAT
ATAGTACTGCTATGTAATGAGATGACGAAAATACGTTCGTGTATATTCTA
TATATCGATGACTATTCCGTCTATGTAGATATTACATTTATAGAGCCACG
TGATGATATTGATACATTGAGTAGTATACACTTGTGGTCGTATACTTCGT
ACGTTNCAAGATTGATCATAATATATANACTATGTAGTAGATGATATATG
ATCGAGAGATACATATATATGACTATATATACAATATTCATATAGTATAT
ATAATAATATAATGTAGCATCAACGTCATACTCGTATTTGTGTAGCGCGA
NACTATACTATAGCGGTTCANTTGTGAGAGNGTGTGATGTTGTGNGGACN
TCATCGATGTATTACGTGCGTGTATGATACTGCATTTTGTGTCTGTCTGA
TACACTGATCACCATGTTGTACTATCAGTGTCGCGTGTGTCTAAATGAGT
TGTATGGAGTTGACGAATGTATTGTGAGGATAGGATAGAAGTGCGTNGAT
ACCATGCTGTGCACAGCNGCTNCGNGNGTAGATACGTTGCTGAATTGCGA
AAGATGTATATATGAACNAGTGCGATTATNCAACGTTAGAACGTCGTACT
ACTAGTATCAGTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_l08.b1 MSMg01no432_l08.b1 CHROMAT_FILE:
MSMg01no432_l08.b1 PHD_FILE: MSMg01no432_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:32 2005
         (450 letters)



>mm_chr2_70440251_70441100
          Length = 850

 Score =  812 bits (420), Expect = 0.0
 Identities = 438/444 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattctctgctgcataccacttagaagatagtcttatttcatgagcctggatggtgga 66
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ggaattctctgctgcataaaacttagaagatagtcttatttcatgagcctggatggtgga 591

                                                                       
Query: 67  ctgcaaacttataggcacttgtacctgaaaggctgcaaaagctatggaaatggccagaat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ctgcaaacttataggcacttgtacctgaaaggctgcaaaagctatggaaatggccagaat 531

                                                                       
Query: 127 tcaaataaggacaagggacaaaaaaacccacaagaaggattttgaagaatagcaaaaaca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tcaaataaggacaagggacaaaaaaacccacaagaaggattttgaagaatagcaaaaaca 471

                                                                       
Query: 187 aagaataatgtacctttctgattactcccatggtccagtttgtttagtcaatctcagtgc 246
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 470 aagaataatgtacctttctgattactcccatggtctagtttgtttagtcaatctcagtgc 411

                                                                       
Query: 247 tgtctataggggtcgcttctctacctgtgctgtagacaaggacttgtctctaatgaataa 306
           ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgtgtataggggtcacttctctacctgtgctgtagacaaggacttgtctctaatgaataa 351

                                                                       
Query: 307 gaccctgtttatagcttaactgaatgatgcaggaactgagccctctttcctgatgatcca 366
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 350 gaccctgtttatagcttaactgaacgatgcaggaactgagccctctttcctgatgatcca 291

                                                                       
Query: 367 gcacctaaacacatttcttaagaagctaagttaggaccactgtacaagcacacataataa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gcacctaaacacatttcttaagaagctaagttaggaccactgtacaagcacacataataa 231

                                   
Query: 427 ggagctgttattctgatgccagat 450
           ||||||||||||||||||||||||
Sbjct: 230 ggagctgttattctgatgccagat 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)