BAC Information

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BAC

Clone NameMSMg01-432M08
Chromosome2 (Build37)
Map Location 84,205,607 - 84,206,026
singlet/doubletsinglet
Overlap geneCalcrl
Upstream genePpia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725
Downstream geneTfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432M08.T7 (MSMg01no432_m08.b1)MSMg01-432M08.TJ (MSMg01no432_m08.g1)
ACCAG524710AG524711
length833781
length of high quality
(start - end)
279 (68 - 346)419 (69 - 487)
definitionCHROMAT_FILE: MSMg01no432_m08.b1 PHD_FILE: MSMg01no432_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:37 2005CHROMAT_FILE: MSMg01no432_m08.g1 PHD_FILE: MSMg01no432_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGACACCGCGGAATTCAAGA
TTTAATACCGCTGATCTAGTCAGCAAGGTTACAAGATTTAAAAAAAAAGT
GGCCTTTTTCTCTCTTAGGGGATAGTATTTTTTTCTTGTGACCAGCGTAA
CAAATTACTACAAACTGGGTGGCTTAAAATGACAAATTAATTTTCTCACA
GCTCTGGAGGCCAAAAGTCTGGGATCAGGGTTACTGTAGGCCATACCCTC
TCAGGAGGATATAACAGAAAATCCACTTCTTACTTGTGTAGTGTCAGGTG
GCTGCCAGCAAGCCTTTTTTTGTTTCCATGTGTGCGACAGCACTGGGGAC
CTACCTGTATTACCAGAATAACTTCCCATCTCAACCCAGCCTCTTTTTGT
CAGAAGCCACCCCCACATAATCCTGATATTAGGGCCTGATTTTCTACCTT
GTCTTTCTGTCTTATCATGTCCCGTATACTGCTTCCCCTTTTAATTTCCT
CCTTTTTTTCCCCTTTATTCTCTTTCCTCTCCCACTAATGTCCCTCCCTT
TCTTCCTTTTTTCCCTTTCCTCCTTCTTTCCCTCCATTTTACCTTTTTCT
CACTCATTCTACCTTTTCTCCCCTTCCTTCTCTCACTTCTATCCCTTTTT
ATCCTTTTTATTTCCTTCCTTCTCCTTTTTTCTTTTTTCTTTTTTCTTTA
CCTTTTTCCTCTTTTCTTCCCCTTACCCCTTTCATTCTTCCTTCTTTCTC
TTTCCATTCTACTCACTCTTTTTTCCTTTCTTCCCTCCTCTTATTTTCCT
CCTCATCCGCTCTTTATTCTCCTCTCTATTATT
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTACTGAAGCTGTAATTAATTACAGTGGACA
TGGTGTAAAAATTTAAAAGCATTTGAGAGATAATAATCTCTTTAAATTAA
AAACCATTCCAGCTGAGACACTTCAGATTAAACTGTCTCTATTTTTTAAT
GTAATAAGCCAAAACATCCAAGGGCATTAATTTTCTGAAGGCGATAAAGT
TAATAGCAATTACATTGCATTCCAAAACCAGTAGTAAGAAAGAAAACAAT
GGTCTCCTGGAATTCTAGGCCATATGCCCTCATGCAATTTTGATTTAGCA
AAGATGTCAGTAAAGTACCCACCAAGTGAAAAGCAAAATTAATACTACTT
CCTCATGTGAAAAAAAAGTCCCAGAGTTAATAAAATAAATGCTCACTGGG
CTTATGAGGCAAGTGGGGCCGCCAAGGCAAACAATACTGAAGCCAAACTG
GACCAGGAAAAGTATAGTATCAGTCTTAATCTCTAATCAGACGGTTCATT
CTTTCAGTTCTCCGTGGAGAAAAACTGTCATAATAAATGGTTTATCAGGG
AGATTGGAAATTTTGGGTAACAATAGCTTTGGTGGCTCTATCTTTATAGT
TCAACAAATGGTGTTTTAATGGGTATGGGTAAACATCAGTTTATAGTTTT
TCACCTTATTTTCCAATCCTCTTTTTGTATCTATTACTTCTCCGTCCTCC
TCCTTTCTTCTTGCCCTCCTTTCTATTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_m08.g1 MSMg01no432_m08.g1 CHROMAT_FILE:
MSMg01no432_m08.g1 PHD_FILE: MSMg01no432_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:37 2005
         (419 letters)



>mm_chr2_84205407_84206226
          Length = 820

 Score =  766 bits (396), Expect = 0.0
 Identities = 414/420 (98%), Gaps = 1/420 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttactgaagctgtaattaattacagtggacatggtgtaaaaatttaaaagcatttgaga 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 620 tttactgaagctgtaattaattacagtggccatggtgtaaaaatttaaaagcatttgaga 561

                                                                       
Query: 61  gataataatctctttaaattaaaaaccattccagctgagacacttcagattaaactgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gataataatctctttaaattaaaaaccattccagctgagacacttcagattaaactgtct 501

                                                                       
Query: 121 ctattttttaatgtaataagccaaaacatccaagggcattaattttctgaaggcgataaa 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 ctattttttaatgtaataagccaaaacatccaagggcattaagtttctgaaggcgataaa 441

                                                                       
Query: 181 gttaatagcaattacattgcattccaaaaccagtagtaagaaagaaaacaatggtctcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttaatagcaattacattgcattccaaaaccagtagtaagaaagaaaacaatggtctcct 381

                                                                       
Query: 241 ggaattctaggccatatgccctcatgcaattttgatttagcaaagatgtcagtaaagtac 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggaattctaggccatatgccttcatgcaattttgatttagcaaagatgtcagtaaagtac 321

                                                                       
Query: 301 ccaccaagtgaaaagcaaaattaatactacttcctcatgtgaaaaaaaa-gtcccagagt 359
           ||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 320 ccaacaagtgaaaagcaaaattaatactacttccgcatgtgaaaaaaaaagtcccagagt 261

                                                                       
Query: 360 taataaaataaatgctcactgggcttatgaggcaagtggggccgccaaggcaaacaatac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taataaaataaatgctcactgggcttatgaggcaagtggggccgccaaggcaaacaatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 820
Length adjustment: 9
Effective length of query: 410
Effective length of database: 811
Effective search space:   332510
Effective search space used:   332510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)