Query= MSMg01no433_a09.b1 MSMg01no433_a09.b1 CHROMAT_FILE:
MSMg01no433_a09.b1 PHD_FILE: MSMg01no433_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:59 2005
(541 letters)
>mm_chr2_127242784_127243724
Length = 941
Score = 1025 bits (530), Expect = 0.0
Identities = 536/538 (99%), Gaps = 2/538 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgctgagtcccagcatctcatagggcatcacatggggaggcaggaatcttggt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgctgagtcccagcatctcatagggcatcacatggggaggcaggaatcttggt 263
Query: 64 tcaggttctataaagccagagtcctatcaggccccttgctcaaagtctccttaggacaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaggttctataaagccagagtcctatcaggccccttgctcaaagtctccttaggacaga 323
Query: 124 ccatatgaagctcaagaagaaggatgaccaaagtgtggatacttcagtgcttcttagaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccatatgaagctcaagaagaaggatgaccaaagtgtggatacttcagtgcttcttagaag 383
Query: 184 gggggggggcaaaatactcacaggaggaaatatggagacaaagtgtggagcagggactga 243
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggggggg-caaaatactcacaggaggaaatatggagacaaagtgtggagcagggactga 442
Query: 244 aggaaaggccatccagagactgccccacctgggggtccatcccatatacagtcagacact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aggaaaggccatccagagactgccccacctgggggtccatcccatatacagtcagacact 502
Query: 304 attgtggatgccaggaagtgcttgctgacaggagcctgataaggctgtctcctgagaggc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 attgtggatgccaggaagtgcttgctgacaggagcctgataaggctgtctcctgagaggc 562
Query: 364 tctgccagagcctgacaaatacagaggtggatgtggatgctcgcagccaaccattggact 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tctgccagagcctgacaaatacagaggtggatgtggatgctcgcagccaaccattggact 622
Query: 424 gagcgcagggtccccgatggaggagttggagaagggactgaaggagctgagggggtttgc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gagcgcagggtccccgatggaggagttggagaagggactgaaggagctgagggggtttgc 682
Query: 484 agtccctgtgggggagcaatagtgttaactggacagaccccctggagctcccagggac 541
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agtcc-tgtgggggagcaatagtgttaactggacagaccccctggagctcccagggac 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no433_a09.g1 MSMg01no433_a09.g1 CHROMAT_FILE:
MSMg01no433_a09.g1 PHD_FILE: MSMg01no433_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:59 2005
(450 letters)
>mm_chr2_127378659_127379504
Length = 846
Score = 804 bits (416), Expect = 0.0
Identities = 440/450 (97%), Gaps = 4/450 (0%)
Strand = Plus / Minus
Query: 1 tgcctccagaattcctgcccagatcctgctctcctggcttcccggcaagcccgggggcca 60
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 646 tgcctccagaattcctgcccagatcctgctctcctggcttccccgcaagccccggggcca 587
Query: 61 aggccttctccctgctgttgggctctgtattgcccattgctgcttagcctctcggggctg 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aggccttctccttgctgttgggctctgtattgcccattgctgcttagcctctcggggctg 527
Query: 121 cctgctacctgctgaggcttgcccacgatggggctctggtatctgtactcacctgcttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cctgctacctgctgaggcttgcccacgatggggctctggtatctgtactcacctgcttat 467
Query: 181 ctagttcctgctgtgccaggcagctgccaccccatcttgccaaatttgtgtgcacccctg 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctagttcctgctgtgccaagcagctgccaccccatcttgccaaatttgtgtgcacccctg 407
Query: 241 cactggcatcacctcgcactgatttgaaagtgatttgtgtgtctggccactgtatcccat 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 406 cactggcatcacctcgcactgatttgaaagtgatttgtgtgtctggacactgtatcccat 347
Query: 301 gcccactccctggctgagctcagctcatagctcttcctttctgggctctgtctgctgact 360
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 346 gcccaccccctggctgagctcagctcatagctcttcctttctgggctctgtctg----ct 291
Query: 361 gacacccccatacgaagggtcccaccttcatgtgggcacataccttcctcaccaaagcgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gacacccccatacgaagggtcccaccttcatgtgggcacataccttcctcaccaaagcgc 231
Query: 421 attcctgggcgtccagatgccatctcctct 450
||||||||||||||||||||||||||||||
Sbjct: 230 attcctgggcgtccagatgccatctcctct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 846
Length adjustment: 10
Effective length of query: 440
Effective length of database: 836
Effective search space: 367840
Effective search space used: 367840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
