BAC Information

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BAC

Clone NameMSMg01-433E09
Chromosome2 (Build37)
Map Location 20,005,956 - 20,006,219
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667521, Armc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360
Downstream geneLOC667609, Etl4, Arhgap21, LOC433408, LOC675912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433E09.T7 (MSMg01no433_e09.b1)MSMg01-433E09.TJ (MSMg01no433_e09.g1)
ACCAG525094AG525095
length724767
length of high quality
(start - end)
264 (315 - 578)316 (68 - 383)
definitionCHROMAT_FILE: MSMg01no433_e09.b1 PHD_FILE: MSMg01no433_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:19 2005CHROMAT_FILE: MSMg01no433_e09.g1 PHD_FILE: MSMg01no433_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXATTTCAAAGAGAGGCGCNGGAATCTT
TGTTTCCAATAAATCCGCTAGCATTTTCTTCCATCATTTTTCTTCCCACT
GATTTATTTAGTCTCCACAGCACAAGCTCAACTAATTTCCTTTTTCTAAG
AGGTCAATGTAAATCTAAACCTTTCATATAAGTACACAGAAATGCCCAAC
AACTCTGCAGTATTTTGTTAACCTTTTATTATCAGAAAGTATCACAAGTA
CTAAGGGATCAAAATGTCAACACTAAGCATAAGAGGACATTTACTGAGTA
GTAATTAATANGAAATGATTGAACCATATTAAATGTCATTAACATTTGAT
ATGTTAATGAGGTTTAGTTAGGATTTTAGACTGAATACATGTTGATGCCT
AGTGAACAAACTTAAGATAGCTGGGTTTTTATATCAGGGCATGCATCAAG
TTGTAAAAGCACAAATAAATATTTTGAATAAAAAGAAAAATATCTAATAA
TGTGGGATTTCACATCACCGGTTGCATAGGTATTCCCTCTTGCAAACTCG
GTGCCATTCATCACAGCAGTTTCTATATTGCTCTGTGGNACTGACACCAG
CAAACAGAACTGAGAGATGCCCCCGTCCCTCTTATTTCTGGGGTGGGGGG
GGNGATTNNNCACCTCCGTTTTGCCCCCCCCCGTCCCTTAGACCCCCCAC
CGTCGCGTCCCGATTCATTTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTGTGTAATTCTAATAGGTCTGCCTTTATATGT
TACTTGACCTTTTTCCCTTACCACTTTTAATATTCTTTCTTTGGTTAGTG
TGTTTTTTGTTTTATTATGTGACAGGAGGAATTTCTCTTCTGGTCCAAAC
TATTTGGAGTTCTATAGGCTTCTAGTATGTTCATGAGCATCTCTTTCTTT
AGGTTAGGGAAGTTTTCTTCTATAATTTTGTTGAAGATATTTACTGGCCC
TTTAAGTTTAAAGTCTTCATTCTCATCTACTCCTATTATCCTTAGATTTG
GTCTTCTCATTGTGTCCTGGATTTCCTGGATGCTTTGCGTCAGTATATTT
TTGTATCTCTCCCTTTCTTTTTTTGTCGTGCCCCCGTTTCTCACTGAATC
CTCTGTTCCTGTCATTTCTTCCTCTTCCTGTCGCCTCTTTCCCTTCCCTC
CCTTTTTTTCCCCTCTTCTTTTCCTTTTTCTCCTTTTCTTTCCCTTCTTC
CCTTTTTTTTTCTCTCCTTCCTTCCCTTTCTCTCCCTTCCCATTTTTTAT
TTCCCTCCCTTCCTCCCTTTCCTTCCCTTCTACTTTCTTCCCCTTCTTTC
CTTTTCCCCTTCTTCTCTCTCTCTATATCCACTATTCCCGTCCCTTCTTA
CTTTACCTCAATTTTCCTCCTTCCATTTCCCCTATTTTTCCCCTTCTTTT
TCCCCTCCATCCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_e09.b1 MSMg01no433_e09.b1 CHROMAT_FILE:
MSMg01no433_e09.b1 PHD_FILE: MSMg01no433_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:19 2005
         (264 letters)



>mm_chr2_20005756_20006419
          Length = 664

 Score =  495 bits (256), Expect = e-144
 Identities = 262/264 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgattgaaccatattaaatgtcattaacatttgatatgttaatgaggtttagttaggat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 464 atgattgaaccatattaaatgtcattaacatttgatatgttaatgaggtttagttaagat 405

                                                                       
Query: 61  tttagactgaatacatgttgatgcctagtgaacaaacttaagatagctgggtttttatat 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tttagactgaatacattttgatgcctagtgaacaaacttaagatagctgggtttttatat 345

                                                                       
Query: 121 cagggcatgcatcaagttgtaaaagcacaaataaatattttgaataaaaagaaaaatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cagggcatgcatcaagttgtaaaagcacaaataaatattttgaataaaaagaaaaatatc 285

                                                                       
Query: 181 taataatgtgggatttcacatcaccggttgcataggtattccctcttgcaaactcggtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 taataatgtgggatttcacatcaccggttgcataggtattccctcttgcaaactcggtgc 225

                                   
Query: 241 cattcatcacagcagtttctatat 264
           ||||||||||||||||||||||||
Sbjct: 224 cattcatcacagcagtttctatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)