BAC Information

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BAC

Clone NameMSMg01-434H22
Chromosome2 (Build37)
Map Location 35,993,520 - 35,993,951
singlet/doubletsinglet
Overlap geneLOC100042236, Mrrf
Upstream geneRab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18
Downstream geneLOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434H22.T7 (MSMg01no434_h22.b1)MSMg01-434H22.TJ (MSMg01no434_h22.g1)
ACCAG526026AG526027
length739760
length of high quality
(start - end)		500 (39 - 538)432 (70 - 501)
definitionCHROMAT_FILE: MSMg01no434_h22.b1 PHD_FILE: MSMg01no434_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:55 2005CHROMAT_FILE: MSMg01no434_h22.g1 PHD_FILE: MSMg01no434_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
CGACAATTGCAGATTCCCTACAGATACTTAAGAACAGCCAAGTTACTCTC
ATATGCAAGAATTTACCAAGGCCTAGGAAAAAGGGGGATTGTGGTATTGC
ATTATTCATGATAAGGTCTGCTAGAGAAGAACCCCCTGGTGCTAGCTTTC
ACAAGGCTCAAAGGAATAGCATCAACTGTGAATACAGTGTGAAATCCTTA
CCTGGCCCCTGCCATTAGCTGACTCTTGGCAGGGCTGTTTTTTCTTTACT
GTAAACATTGCCTGGTTACTGTCAGTCCTTTGAAGGCATTCCTCTGTTTT
GTGTCAGATAACTTCAATGTACCTTGCCTGCTGTGACACCCTACTCTTTT
GTTTTCTGTATTATATAAAACTGATGCTAACTTTGACAAAATTACATCCA
GATACAGCACTCCCTTGTGTTTGTATTTGTTTGTTATTCTTTTCTCACCA
ACTCCTTGCTCACCTGTAACCAGAACCCCATTCCCTGCAGATCAGAGACC
AGTTTGTTACACCCACTTCGGCCGGCAAGGAAGACGAAACACGGTCGGAT
TCTTTCTCACAGCCTTTTATTGCAGGAACACCTCGATGTTGCTACAGGAA
ATCCCGGGGACCCACCGTAAGAATTCTTATATACCCCCCCGCCCCGGGGG
AGGCCTTATGGGCCTCCCTGGGATTTGTCCGCCCTCGTG

ATGTGGGAGGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAAGTTGCATGTGATAGGGTTGATGAGGCG
GGTACATTGGAATCCAGGTGTCCTAGTCTTTACGTGAAGTCTTTGTCCAC
TATTCCTCCTTTGGCGTGTGCCAAGGACATTTGGATGTTGTATTGAGTCA
GGTATTCGAAATACCTTTCTTTACATGGTACTGAGTTTGTAAAGAAGTAC
ACCATGTTCCAAGCAGAGAACTGGAAATCCAGGGGATAATGGAAGCAGTG
TTGAGAAATAGAACCCAGGACCAGTCATCAGAGGTGTAGATTCCAACTCT
GGTGCCAGCATTTTGACATTTGGCAAGGATTTAATCTTTGTGGAAGTCCA
TTATCATACTTAGCACATTTGTATGATGTCTTTATTTTTGTACTATACTA
AGTTCAGGGTACAGTAATAGACAAGTANGTTAGTAGGTAGATTCGTGTAC
TAAAGCTGTTGTGAAGTGCCCGCAGTCATATGGAGATATTTAGATAAAGA
TCAAGTAATTTTCCCATTTTACTTTTATTGGAAAAAATTAATGGCTGCGA
TGGAGAATTTGGCAAGAAAGCTGCCTTTTTCGAAAAGTGTGACACGTCTA
ATTGTAATAATTTGGTCCATGTCCCCTGCGCTTTCCCGAAATATTGTCAC
TNAATATTGGTGTGGCTCAATATATATAGAACACCTTCCTCCTTTCTGTA
TCATCTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_h22.g1 MSMg01no434_h22.g1 CHROMAT_FILE:
MSMg01no434_h22.g1 PHD_FILE: MSMg01no434_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:56 2005
         (432 letters)



>mm_chr2_35993320_35994151
          Length = 832

 Score =  791 bits (409), Expect = 0.0
 Identities = 426/432 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagttgcatgtgatagggttgatgaggcgggtacattggaatccaggtgtcctagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagttgcatgtgatagggttgatgaggcgggtacattggaatccaggtgtcctagtct 260

                                                                       
Query: 61  ttacgtgaagtctttgtccactattcctcctttggcgtgtgccaaggacatttggatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacgtgaagtctttgtccactattcctcctttggcgtgtgccaaggacatttggatgtt 320

                                                                       
Query: 121 gtattgagtcaggtattcgaaatacctttctttacatggtactgagtttgtaaagaagta 180
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gtattgagtcaggtattccaaatacctttctttacatggtactgagtttgtaaagaagca 380

                                                                       
Query: 181 caccatgttccaagcagagaactggaaatccaggggataatggaagcagtgttgagaaat 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 caccatgttccaagcagagaactggaaatccaggggataacggaagcagtgttgagaaat 440

                                                                       
Query: 241 agaacccaggaccagtcatcagaggtgtagattccaactctggtgccagcattttgacat 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacccaggaccagccatcagaggtgtagattccaactctggtgccagcattttgacat 500

                                                                       
Query: 301 ttggcaaggatttaatctttgtggaagtccattatcatacttagcacatttgtatgatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggcaaggatttaatctttgtggaagtccattatcatacttagcacatttgtatgatgt 560

                                                                       
Query: 361 ctttatttttgtactatactaagttcagggtacagtaatagacaagtangttagtaggta 420
           |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 561 ctttatttttgtactatactaagtacagggtacagtaatagacaagtaggttagtaggta 620

                       
Query: 421 gattcgtgtact 432
           ||||||||||||
Sbjct: 621 gattcgtgtact 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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