BAC Information

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BAC

Clone NameMSMg01-434I02
Chromosome2 (Build37)
Map Location 35,847,164 - 35,847,566
singlet/doubletsinglet
Overlap genenone
Upstream geneHc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11
Downstream geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434I02.T7 (MSMg01no434_i02.b1)MSMg01-434I02.TJ (MSMg01no434_i02.g1)
ACCAG526033AG526034
length842735
length of high quality
(start - end)		---548 (68 - 615)
definitionCHROMAT_FILE: MSMg01no434_i02.b1 PHD_FILE: MSMg01no434_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:56 2005CHROMAT_FILE: MSMg01no434_i02.g1 PHD_FILE: MSMg01no434_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATAATCCACCATAACAAAAAATTAAAAAATTATTATATTTCCNTTTAA
ATTTTAAAAAATATTATNTCCCCCCTTTAAATAAAATCTTTCATAAATTT
AAATCNATTAAAATAAAAAATTACAATTATTAATGATATATTCTAGTAAA
AATAAAAAAAATATTAAATTTCATATTTATTGATTTAATATTTTTTATAT
TTATTAATTTAAATATTTTATATTAATTTATAATTTTATTTAAAATATAA
TAAAATAATTAATACATATATAATATAATTTTATTTTTTTTATTTTTCTT
TTTAATATATATTATAAAATAAAAAATAAATTTACTAAAAATAAAAAAAA
TAAAAAACTAAAAAAAATAAATACTAATATAATATTTAAATAATTTATAT
TTATAAATATTTTTAAAATTATATAAAATAATATAAATTATACAAAATTA
AAAAATATTAAAAATTATTAAATTTATTAAAAATATTTTAAAAATTTAAT
AAAATAAATATAAAAATATTTATAAAAATTTTATTTATAATAAAATAATA
ATACAAACAATTAATTAATATTAAAAATCATAAAATACATATTTTATTAA
ACATAACAAATATAAATATATATATATTTCATATAAAAAAAACAAATAAA
ATATAAAATATAAATAATTATAAAAATAAAATTATAAAATAAATTTTAAA
AATATATATATTAAATATAATTAAAAATTTATATAAAAAAATATATTATA
ATAAACAATAATATTAAAATACATAATATACTATAAAATTAATTTAAAAT
ATCNATATAAATAATAATCATATATAATAATATAATAAAATA

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCTTTTCATCCTGGCCCGGGCTAGATGCTGGT
CCCACCCCCACCTCCCCAACCTTTCCACCCTCCACCCTCCCTCCTCCCCC
TGCACTCCATTCTCTGCTATTCAGAGGCTCCCAGCAGCACCTGGATGTCC
AAGAGGATGAACATCCCATGACTCCTGCCTCACTTCATCACAGGTTAAGG
GACTGCAAACCAGTTCCGGCTTTCCTACTCCCCCAGAGCAGTGTCTTTGT
GCTTCCAAACAGCCCAGCACCTGCCATGGGGGCAGTATGGGATAAGCACG
GTCAAATTCCCCATGTTCTGCCTCCCCAAGAGGCAGTGCCCATCTGCAGG
GCAGACATGGACTGACTCTATCAGGTGGAAGGCATGTTGGTCTAAGGTAG
TTTGAAGTGGGCTCTGACCCTACTGTGGTCCAGACCTGGGCTCATTCACA
AAGGATGGGTCTGAAGGTGGCAACAAGAGCCTTGATTCCCCTCTGATATA
TTTGCCTCTTTCCTCTCAGGCCAGGTCTTTGGAGTAACAGTTTCCTTCTA
TGATAGAAGTGTCAGGGCACTGTTTTCTTCTAAGCATCAGAGACCCCTCC
CCAACTCTGCAGGCCCTTTTCCCCTAATCTGTAAATCCTTGTTTGTCCCT
CAAGAAAGGAAGCGAAAAAAAATCTGTCCCGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_i02.g1 MSMg01no434_i02.g1 CHROMAT_FILE:
MSMg01no434_i02.g1 PHD_FILE: MSMg01no434_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:56 2005
         (548 letters)



>mm_chr2_35846619_35847566
          Length = 948

 Score =  756 bits (391), Expect = 0.0
 Identities = 400/403 (99%)
 Strand = Plus / Minus

                                                                       
Query: 146 atcccatgactcctgcctcacttcatcacaggttaagggactgcaaaccagttccggctt 205
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 948 atcccatgactcctgcctcacctcatcacaggttaagggactgcaaaccagttccggctt 889

                                                                       
Query: 206 tcctactcccccagagcagtgtctttgtgcttccaaacagcccagcacctgccatggggg 265
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tcccactcccccagagcagtgtctttgtgcttccaaacagcccagcacctgccatggggg 829

                                                                       
Query: 266 cagtatgggataagcacggtcaaattccccatgttctgcctccccaagaggcagtgccca 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 cagtatgggataagcacggtcaaattccccatgttctgcctccccaagaggcagtgccca 769

                                                                       
Query: 326 tctgcagggcagacatggactgactctatcaggtggaaggcatgttggtctaaggtagtt 385
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tctgcagggcagacatgggctgactctatcaggtggaaggcatgttggtctaaggtagtt 709

                                                                       
Query: 386 tgaagtgggctctgaccctactgtggtccagacctgggctcattcacaaaggatgggtct 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgaagtgggctctgaccctactgtggtccagacctgggctcattcacaaaggatgggtct 649

                                                                       
Query: 446 gaaggtggcaacaagagccttgattcccctctgatatatttgcctctttcctctcaggcc 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gaaggtggcaacaagagccttgattcccctctgatatatttgcctctttcctctcaggcc 589

                                                      
Query: 506 aggtctttggagtaacagtttccttctatgatagaagtgtcag 548
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aggtctttggagtaacagtttccttctatgatagaagtgtcag 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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