BAC Information

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BAC

Clone NameMSMg01-435C02
Chromosome2 (Build37)
Map Location 118,341,189 - 118,341,491
singlet/doubletsinglet
Overlap genenone
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859
Downstream geneBmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435C02.T7 (MSMg01no435_c02.b1)MSMg01-435C02.TJ (MSMg01no435_c02.g1)
ACCAG526506AG526507
length756770
length of high quality
(start - end)
380 (71 - 450)303 (78 - 380)
definitionCHROMAT_FILE: MSMg01no435_c02.b1 PHD_FILE: MSMg01no435_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:45 2005CHROMAT_FILE: MSMg01no435_c02.g1 PHD_FILE: MSMg01no435_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGTATCCAAACCAAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCATAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACATTCCTTCTTTGTTGGTG
GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTTA
GAAAATTGGACATAGTACTACCGGAGGATCCCTCAATACCTCTCCTGGGC
ATATATCCAGAAGATGTCCCAACTGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACTTTTACACAAGG
CAGTACTACTCAGCTATTACTAAGAATGAATTTATGAAATTCCTACGCAA
ATGCATGCACCTGGCAGGCATCATTCTGAACGAGGCACACCATCTTTAAG
CAATTCTACTATTTGTATTTTTCCGATAAATGCGCTTCAACCTTTCTACT
TATTCTTCCTTCTTATCACAGCTACCTTTTTGTTTAACCGTCTGATAACT
CTTCCAACACAGTCCAATTTATCTGTTGGACCCCGTTGTACCCCTTCATT
ACAACN
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGAAAAACCCTACACAAT
AAGTGTGCTGGAATGGCTACCTGGCCAGCAGCTGATTCTTCAGTTTTCCT
GGAGGAAAGTGCTGCCCTAGGTAACCAGCCCTCCCTTCCTCCCTCCCTTC
CTCCCTCCCTTCCTCCCTCCCTGATGGAAGGTGAATGTGAGTGGCTTGCA
TCCCTTCTAGGCTGCGAAGCCTGGTGTGCGGTCTCCATCCTGTGTTTTCC
AGACAGTGCTTTGAAAAGAACGTGTTGATGGTGACAGCAAAATAGCCACG
GGAAGGCTGAAGGCCACAGACGTTAAGCAGACATGAGTGAGGAATGAGCT
CTGTGTGAAGAGAGAAGCCCCACTTATTCTAACATTTTGTAATTCTTAGA
AGTATTACTCACACGGTGAGTTTAGGAGTATTTTTTATAGAACTATTTCC
GACTATGTTTAATTATGTCTACATATCGTAGGACCTTGTCGGTGATGCAT
GCCTTTTTTATTATCCTATCTTTTGTTACTACCATTTGTGCGACGCCCCT
TATTTATTCCCCTCTTTCTTTTGCCCTCTTCCCTACTTTGTCCGCCCTCC
CTCCTATTATTTTATTCTGTGTTTCTAACCTGTTGTCTCCTGACGATGAT
GGTTATTGGTGTGTGAAACGTGATTACGTGAATACGCTTCCTTTGTGCAT
CCCGCGCATCCCGTCTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_c02.g1 MSMg01no435_c02.g1 CHROMAT_FILE:
MSMg01no435_c02.g1 PHD_FILE: MSMg01no435_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:45 2005
         (303 letters)



>mm_chr2_118340989_118341691
          Length = 703

 Score =  586 bits (303), Expect = e-172
 Identities = 303/303 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccagaaaaaccctacacaataagtgtgctggaatggctacctggccagcagctgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcccagaaaaaccctacacaataagtgtgctggaatggctacctggccagcagctgatt 260

                                                                       
Query: 61  cttcagttttcctggaggaaagtgctgccctaggtaaccagccctcccttcctccctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcagttttcctggaggaaagtgctgccctaggtaaccagccctcccttcctccctccc 320

                                                                       
Query: 121 ttcctccctcccttcctccctccctgatggaaggtgaatgtgagtggcttgcatcccttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctccctcccttcctccctccctgatggaaggtgaatgtgagtggcttgcatcccttc 380

                                                                       
Query: 181 taggctgcgaagcctggtgtgcggtctccatcctgtgttttccagacagtgctttgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggctgcgaagcctggtgtgcggtctccatcctgtgttttccagacagtgctttgaaaa 440

                                                                       
Query: 241 gaacgtgttgatggtgacagcaaaatagccacgggaaggctgaaggccacagacgttaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaacgtgttgatggtgacagcaaaatagccacgggaaggctgaaggccacagacgttaag 500

              
Query: 301 cag 303
           |||
Sbjct: 501 cag 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)