BAC Information

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BAC

Clone NameMSMg01-435D08
Chromosome2 (Build37)
Map Location 22,422,128 - 22,422,369
singlet/doubletsinglet
Overlap geneMyo3a
Upstream geneGpr158, LOC637235, Myo3a, LOC100041703
Downstream geneGad2, Apbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435D08.T7 (MSMg01no435_d08.b1)MSMg01-435D08.TJ (MSMg01no435_d08.g1)
ACCAG526566AG526567
length779789
length of high quality
(start - end)
335 (49 - 383)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no435_d08.b1 PHD_FILE: MSMg01no435_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:51 2005CHROMAT_FILE: MSMg01no435_d08.g1 PHD_FILE: MSMg01no435_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAACTGTTTCCTACCGAATGGCTGAGAAGCACCTAAAGAACT
GTTCTTAGTCATGAGGGAAATGCAAATCAGAACAACCCTGAGATTCCACC
TCACACCAGTTAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGG
ATGGAACTAGAAAAAATATCATCCTGATTGAGGTAATCCAATCACAAAAG
AACACACATGATATGCACTTACTGATAAGTGGATATTAGCCCAGAAGCTC
AGAATATCCCAGATACAATTCATAGTACACATGAAGCTCAAGAATAAGGA
AGACCAAAGTGTAACTACTTCGGTCCTTCTTAGAAGGGTGAACAAAATAC
CCATGGGAGGAATTACTAAGCGCGCAGCCAAGACTGAAGGAAAGGCCACC
CATACACTGTCTCACCTGGGGATCCATCCCATATACAGTTACCAAATTTG
GACTTTATTGTGCCCTACAACTATTGCTTTGCTGATAGGAACCTGATATA
ATTGTCTTCCGACATTTTCCCGCTTTCCCCCCCCCCATAAACATTTTGTT
GTTTTTTCACCATTCCCTCGCCTCTCCTCCCTTCTTTTGTCCCTTCCTTT
TTCACCGTTTTTTTTCACTCCCCCTTTCTTTTTTCCCCCCTTTATCTCCA
TTTTTCTTCCCCTCCTTCTCCCCCATTTCTCTTTTTTTCTCCCCCCCTTT
TTTTTTTCCATATTACCCTCCCCTTCCTC
CTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAAATCCATAACGCCATACT
GTTTGCTTGTGGTGCCAGGCCTCAATGAGCAATGGCATGCTGAGAGAGTT
CTACATTAAAGGTTACCAGCTTTTATGACTCAGCTGTAACATTTGATTTT
TAAGTAATTTTCTTGATGGGCACAATGAACTCTTTATGATAACCTTTGTT
GATGAATTTATTCATTTAAAAAAAAGTAAGATTTTCCCTTAAGGGATAGG
CGAAGCTAACAACCCTAGGTATTTTTTATACCTTCGGTCTTAAGGTTTCT
GCCTTGACCAAGTTCAAGCTTAGAATGATCTGAATTCCCCCTCTGTTTAT
TTTGTTGAGAAATTGTTCTCCCCCCCCAACTACCCTTTTTTGTTTTACCT
TTCCTTATGACCTCCTTCTTGCCTCTTTCCCGCCTCTTTATCCTTCTCCC
CCCCCTCCTATATCTGCTTTCTTCCCGCTTCTTCTACTCTCTCTCCTTTT
TCTTTCCCCCCCCTCTTTTTTACTTTCCTTTCTCTCTCCTCCTCCCCCTT
CTTTCTTTTTATTTATTCTCTCTTTTCCCATCTCCCTTTTTTTTCTTTTT
CCCCTTTTTTTCACCCCTCTTCCCACCCCCTTTCTTTTCGTTCTCCCCTT
TTTTTTTTTCGTCCCTCCTCACCCTCTTATTTTTTATTATCTTTCTCCTT
TTTATCTTCTCCCACTTTTTTTTTTCCTATTACCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_d08.g1 MSMg01no435_d08.g1 CHROMAT_FILE:
MSMg01no435_d08.g1 PHD_FILE: MSMg01no435_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:51 2005
         (244 letters)



>mm_chr2_22421928_22422570
          Length = 643

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%), Gaps = 1/243 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcaaaatccataacgccatactgtttgcttgtggtgccaggcctcaatgagcaatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcaaaatccataacgccatactgtttgcttgtggtgccaggcctcaatgagcaatggc 260

                                                                       
Query: 61  atgctgagagagttctacattaaaggttaccagcttttatgactcagctgtaacatttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctgagagagttctacattaaaggttaccagcttttatgactcagctgtaacatttga 320

                                                                       
Query: 121 tttttaagtaattttcttgatgggcacaatgaactctttatgataacctttgttgatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttaagtaattttcttgatgggcacaatgaactctttatgataacctttgttgatgaa 380

                                                                       
Query: 181 tttattcatttaaaaaaaagtaagattttcccttaagggataggcgaagctaacaaccct 240
           |||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 381 tttattcatttaaaaaaa-gtaagattttcccttaagggataggtgaagctaaaaaccct 439

              
Query: 241 agg 243
           |||
Sbjct: 440 agg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space:   148990
Effective search space used:   148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)