BAC Information

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BAC

Clone NameMSMg01-435D20
Chromosome2 (Build37)
Map Location 119,375,055 - 119,537,464
singlet/doubletdoublet
Overlap gene1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1
Upstream geneBmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1
Downstream geneItpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435D20.T7 (MSMg01no435_d20.b1)MSMg01-435D20.TJ (MSMg01no435_d20.g1)
ACCAG526590AG526591
length796785
length of high quality
(start - end)		440 (68 - 507)390 (71 - 460)
definitionCHROMAT_FILE: MSMg01no435_d20.b1 PHD_FILE: MSMg01no435_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:54 2005CHROMAT_FILE: MSMg01no435_d20.g1 PHD_FILE: MSMg01no435_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,375,055 - 119,375,494)(119,537,075 - 119,537,464)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTACATTTACTGGGCCTGGTGGTGTCCATACCTTTAATCCCAACACTCC
AAAGGGAGCAGAATTTGAGATCAGCCTGATCTACATAACAGGCTCCAAGA
TAGCTAGGGCTACAGAGGGAAACTCTGTCATGAAAAACAAAATACAACAC
AAAACAAGACAAACAGAAAAATTCACTACATAGCCCAGGCTGGTTTCAAA
CTCATGACAGTCCTCTTGCTTCAGCCCCCCCAAGTGCTGGGAATATAAGT
ATGAGCCACCATGCTTAATTGAGGAAAAGCTGTTTTCTTTTCAGAATGAA
TGGGACAGTGATGTCATTCCAATTTCATTAGTCCTGGGTGTAGGACTGAG
TTGTTTTTCCTTGTGACTCATGGACAAACCTAAGTGATCATGTAAGAACT
ATTATCCTGGTTACCCAACAGTAACTCAAATATGACAAAGATACCCTAAA
TTCCCAGCAAAACCACTGTATATATTGATTGGCAAAACCTAATGAAACAA
AAAGTGAGTTTTCCCAGTGCCTGCTTAACACCATGTCCCAACCTCGCCAG
TTGATGGTTTCTAGATTCCCCCTACCCGGCCCTGTTATAAAATTTTGAAC
ACCATTTGTGGACAACCATTTTTTTATAAACGCCATTTCTTTACCCCCCC
TTTTTTCCCTTTCTAAATTCCCACCCAATCACCCCCTTTTTATTTTTTTT
TTCTCGCCGCCATTTTTTTTTCGCTCTTTTTCCCCTCTCCTCCCCN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCCTGGAAGAGCACTCCATATTATGATCT
AATATCTGCTGATACCTTCAGATATAGAGATGACTAATTTTATAAATTTT
TATGACTCTACTTATACCAAGTCTAGGGAGTACACTTCTGAGCAGACATA
ATCAAGCTGTTACCTGGGAGAGAAAGTCAAGGGTGCTCACACTCTAGTCA
GCCAGACTCCAGTCAAGAAGTCCTAAGGAGTTCATCAGTGTGGCTGATAA
TGCAGATTGTCTCCTGCATCTGCACTGTCTAGCCTACTGGGCTGTTACCA
CCTGCCTCGGTCCCACGTGCTCCACACCAGCAGCTGTGCTCTGAGAAGGC
CTCCTACCTGAGATTCCTGAGTCTGTGCTCTGGGAAGGCCTCCTACCTGA
GATTCCTGAGTCTGTGCTCTGGCATATTCTCCTACCTGAGATTCTTGAGT
CTGTGCTCCGCCAAGTCCTCTTTCCTTATATTCTTGATTCTGCGCTCCGG
TTATTTTCCCCTCCCTGATATTTCTTATCTCTGGCTCCTGCTACCCCCTT
TTACTCATATATTTTTATCCCTTTTCCCCGTCTTTCTTCTATTTTTTTTT
TCCCTTTTTTTTTTCCTTTTTCCTCTCCCCCCTTTTTTCCTCACCCTTTC
TTTTTTTTTTCCTATTTCCCCTCCTCTCATTTCTTATAATTTCTCTCCTA
TTTTCTCCCGCTTTTTCTTTCTTCTTTTTCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_d20.b1 MSMg01no435_d20.b1 CHROMAT_FILE:
MSMg01no435_d20.b1 PHD_FILE: MSMg01no435_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:54 2005
         (440 letters)



>mm_chr2_119374855_119375694
          Length = 840

 Score =  851 bits (440), Expect = 0.0
 Identities = 440/440 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtggtgtccatacctttaatcccaacactccaaagggagcagaatttgagatcagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtggtgtccatacctttaatcccaacactccaaagggagcagaatttgagatcagcct 260

                                                                       
Query: 61  gatctacataacaggctccaagatagctagggctacagagggaaactctgtcatgaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatctacataacaggctccaagatagctagggctacagagggaaactctgtcatgaaaaa 320

                                                                       
Query: 121 caaaatacaacacaaaacaagacaaacagaaaaattcactacatagcccaggctggtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaatacaacacaaaacaagacaaacagaaaaattcactacatagcccaggctggtttc 380

                                                                       
Query: 181 aaactcatgacagtcctcttgcttcagcccccccaagtgctgggaatataagtatgagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactcatgacagtcctcttgcttcagcccccccaagtgctgggaatataagtatgagcc 440

                                                                       
Query: 241 accatgcttaattgaggaaaagctgttttcttttcagaatgaatgggacagtgatgtcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accatgcttaattgaggaaaagctgttttcttttcagaatgaatgggacagtgatgtcat 500

                                                                       
Query: 301 tccaatttcattagtcctgggtgtaggactgagttgtttttccttgtgactcatggacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccaatttcattagtcctgggtgtaggactgagttgtttttccttgtgactcatggacaa 560

                                                                       
Query: 361 acctaagtgatcatgtaagaactattatcctggttacccaacagtaactcaaatatgaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acctaagtgatcatgtaagaactattatcctggttacccaacagtaactcaaatatgaca 620

                               
Query: 421 aagataccctaaattcccag 440
           ||||||||||||||||||||
Sbjct: 621 aagataccctaaattcccag 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no435_d20.g1 MSMg01no435_d20.g1 CHROMAT_FILE:
MSMg01no435_d20.g1 PHD_FILE: MSMg01no435_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:54 2005
         (390 letters)



>mm_chr2_119536875_119537664
          Length = 790

 Score =  754 bits (390), Expect = 0.0
 Identities = 390/390 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctggaagagcactccatattatgatctaatatctgctgataccttcagatatagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ttcctggaagagcactccatattatgatctaatatctgctgataccttcagatatagaga 531

                                                                       
Query: 61  tgactaattttataaatttttatgactctacttataccaagtctagggagtacacttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgactaattttataaatttttatgactctacttataccaagtctagggagtacacttctg 471

                                                                       
Query: 121 agcagacataatcaagctgttacctgggagagaaagtcaagggtgctcacactctagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 agcagacataatcaagctgttacctgggagagaaagtcaagggtgctcacactctagtca 411

                                                                       
Query: 181 gccagactccagtcaagaagtcctaaggagttcatcagtgtggctgataatgcagattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gccagactccagtcaagaagtcctaaggagttcatcagtgtggctgataatgcagattgt 351

                                                                       
Query: 241 ctcctgcatctgcactgtctagcctactgggctgttaccacctgcctcggtcccacgtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ctcctgcatctgcactgtctagcctactgggctgttaccacctgcctcggtcccacgtgc 291

                                                                       
Query: 301 tccacaccagcagctgtgctctgagaaggcctcctacctgagattcctgagtctgtgctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tccacaccagcagctgtgctctgagaaggcctcctacctgagattcctgagtctgtgctc 231

                                         
Query: 361 tgggaaggcctcctacctgagattcctgag 390
           ||||||||||||||||||||||||||||||
Sbjct: 230 tgggaaggcctcctacctgagattcctgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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