Query= MSMg01no435_f11.b1 MSMg01no435_f11.b1 CHROMAT_FILE:
MSMg01no435_f11.b1 PHD_FILE: MSMg01no435_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:02 2005
(272 letters)
>mm_chr2_74195112_74195783
Length = 672
Score = 484 bits (250), Expect = e-141
Identities = 262/270 (97%), Gaps = 8/270 (2%)
Strand = Plus / Plus
Query: 4 ggaattctctag----ttcccggaattatatctttttccaacagtcaagagtggggatgt 59
|||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctagggaat----ggaattatatctttttccaacagtcaagagtggggatgt 259
Query: 60 tgggtatggggaatatacctgaaataaggacttggtaaatttatcttctaattctgaacc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgggtatggggaatatacctgaaataaggacttggtaaatttatcttctaattctgaacc 319
Query: 120 cagtgacaagaggccaagaggaatgactacttagcagacagagaagacagcatgtgtcta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagtgacaagaggccaagaggaatgactacttagcagacagagaagacagcatgtgtcta 379
Query: 180 gtacttagcaggtaccacatgtatggaggcaagccctgtaggtgcactatataatcaatc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtacttagcaggtaccacatgtatggaggcaagccctgtaggtgcactatataatcaatc 439
Query: 240 tcagcttaccctttccaagaccaatgtttc 269
||||||||||||||||||||||||||||||
Sbjct: 440 tcagcttaccctttccaagaccaatgtttc 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space: 174369
Effective search space used: 174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no435_f11.g1 MSMg01no435_f11.g1 CHROMAT_FILE:
MSMg01no435_f11.g1 PHD_FILE: MSMg01no435_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:02 2005
(403 letters)
>mm_chr2_74352007_74352809
Length = 803
Score = 741 bits (383), Expect = 0.0
Identities = 395/399 (98%)
Strand = Plus / Minus
Query: 5 tgattgtttatgaaacctttctccccttaaatatggtaatctcctgtagtacagcttatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tgattgtttatgaaacctttctccccttaaatatggtaatctcctgtagtacagcttatt 744
Query: 65 tcagaacagcagccaggcaggatgctcagtggacaaagccaattgctgccaagcctgact 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcagaacagcagccaggcagggtgctcagtggacaaagccaattgctgccaagcctgact 684
Query: 125 acttgagttcagctccaaggactcacatggtagaaggaaagaactgactttagaacgctg 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 actcgagttcagctccaaggactcacatggtagaaggaaagaactgactttagaacgctg 624
Query: 185 tcctctgacctccacacattgacttcatacatgtgcccccaccccagataaataatgtaa 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcctctgacctccacacatggacttcatacatgtgcccccaccccagataaataatgtaa 564
Query: 245 taacaaaccacatctggacagtgaagttagactactgaaagccaagattctctgttctcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 taacaaaccacatctggacagtgaagttagactactgaaagccaagattctctgttctcc 504
Query: 305 cctcctgctggccactgatggagacagcagaagctatttaggtttcagtaggttgataaa 364
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 503 cctcctgctggccactgatggagacagcagaagctgtttaggtttcagtaggttgataaa 444
Query: 365 accaatttatctacccaacaaacactagctttgaatcca 403
|||||||||||||||||||||||||||||||||||||||
Sbjct: 443 accaatttatctacccaacaaacactagctttgaatcca 405
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
