BAC Information

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BAC

Clone NameMSMg01-435G11
Chromosome2 (Build37)
Map Location 26,257,140 - 26,257,608
singlet/doubletsinglet
Overlap geneInpp5e
Upstream geneNpdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca
Downstream geneAU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435G11.T7 (MSMg01no435_g11.b1)MSMg01-435G11.TJ (MSMg01no435_g11.g1)
ACCAG526716AG526717
length767763
length of high quality
(start - end)
473 (46 - 518)452 (74 - 525)
definitionCHROMAT_FILE: MSMg01no435_g11.b1 PHD_FILE: MSMg01no435_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:07 2005CHROMAT_FILE: MSMg01no435_g11.g1 PHD_FILE: MSMg01no435_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAATGATATACAGGTCCTGAGTGTAGTCAGCCTCGGTGGGGAGCA
GAAACTCATCCAGGCTCGCTGGGAGCTCCTGTGGTGAAGACCACAAAACA
GTCAAGACCGCTGGGTTCCCTCAGGTTGGGAGCAGAGGTTCAAGAGCAAG
GCCCTGCACCATCACCTGGAAATGGTCCCAGAAATAGCTTCTTTTCAAAG
AGAAGTGTACACAGCTGTAGGTTTGGTCTTCCAGGGACCTTGACATGACA
GATACTTAAGTCTCCCTCTTAAGGCACAACTGCTCAGTTGCTACTTCCCA
GCAGGCGCCCCTTCTTACCAGGCGCTTCAATCTGCGCAGGCTGCCTGGGG
GGTATGCCCATCCTCCCAGTGCATGCCCAACCCCGATCCCTCACGGAGAC
TCACAGAGCCATTATGCTGTGACCAGTCAGGACATGGAGTCCAGCTGCCT
CTGGCTTACCTCACTGTGACCCCTCTCACCTTCTGGCCCTGCATGTTCCA
GGGAACCACAAAAAGAGCCATGTTTCGGCCTGTGAATAACTTGGCAGCTC
TTCTGTCCCTAAATAGGCCCCTTTGGTTTTTAAAATTTTCTTTACAAAAA
TTTTTATACTAAAAAAATAAGCCCAGGGTTCCTTTTCTTTTTTTTTTCCC
TTATTTTTTTCCAACCTTCTTTCCTCCCCCCCGTTTTTTTCCTTTTCCTT
ATTTCCCCTTTTCCCCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGTCGACACAGCAAGT
TCCAGGACAGCAAGGACTACATGTAGAGACTCTGTTTTGAAAAACAAAAA
TAAAATCAAACCAAATCAAACCAACCAGCCAACCAACAAATAAACAAAAC
CCCCAACAGGAACAGGGATTGCAAGCTGGTACAACCATTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACAACCTGAGGACCCAGCT
ATACCACTCCTGGACATATACCCAGAAGATGCTCCAACATATAACAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAAGAAGCTGGAAAG
AACCCAGATGTCCTTCAACAGAGAAATGGATATAGAAAATGTGGTACGTT
TATACAGTGGAGTACTACTCAGCTATTAAAAACAATGAATTTATGAAATT
CCTAGGCAAATGGATGGAAGTAGAAAATATCATCCTGAGTGAGGGAACCC
GGTTACCAAAGAACACACAAGGTGTGAAATCACTGTAAAGCGGAAATTAA
TCCCAAAAGTCCAAAAAACCATGAATCACTTCTCAAACCACCCGAATCTG
GTGAAAAATAAAAAACAAAGTGAAATGGCTTTTGGCCCTCTTTAAAACGG
AATATAATATTTTTGTGTCACCCCCCCTTATTTTTTTTGGCTCCTAACCC
CTGTTTTAATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_g11.b1 MSMg01no435_g11.b1 CHROMAT_FILE:
MSMg01no435_g11.b1 PHD_FILE: MSMg01no435_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:07 2005
         (473 letters)



>mm_chr2_26256936_26257808
          Length = 873

 Score =  884 bits (457), Expect = 0.0
 Identities = 466/469 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatgatatacaggtcctgagtgtagtcagcctcggtggggagcagaaactcat 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatgacatacaggtcctgagtgtagtcagcctcggtggggagcagaaactcat 264

                                                                       
Query: 65  ccaggctcgctgggagctcctgtggtgaagaccacaaaacagtcaagaccgctgggttcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaggctcgctgggagctcctgtggtgaagaccacaaaacagtcaagaccgctgggttcc 324

                                                                       
Query: 125 ctcaggttgggagcagaggttcaagagcaaggccctgcaccatcacctggaaatggtccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcaggttgggagcagaggttcaagagcaaggccctgcaccatcacctggaaatggtccc 384

                                                                       
Query: 185 agaaatagcttcttttcaaagagaagtgtacacagctgtaggtttggtcttccagggacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaaatagcttcttttcaaagagaagtgtacacagctgtaggtttggtcttccagggacc 444

                                                                       
Query: 245 ttgacatgacagatacttaagtctccctcttaaggcacaactgctcagttgctacttccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgacatgacagatacttaagtctccctcttaaggcacaactgctcagttgctacttccc 504

                                                                       
Query: 305 agcaggcgccccttcttaccaggcgcttcaatctgcgcaggctgcctggggggtatgccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcaggcgccccttcttaccaggcgcttcaatctgcgcaggctgcctggggggtatgccc 564

                                                                       
Query: 365 atcctcccagtgcatgcccaaccccgatccctcacggagactcacagagccattatgctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcctcccagtgcatgcccaaccccgatccctcacggagactcacagagccattatgctg 624

                                                            
Query: 425 tgaccagtcaggacatggagtccagctgcctctggcttacctcactgtg 473
           ||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 625 tgatcagtcaggacatggagtccagctgcctctgccttacctcactgtg 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)