Query= MSMg01no435_l11.b1 MSMg01no435_l11.b1 CHROMAT_FILE:
MSMg01no435_l11.b1 PHD_FILE: MSMg01no435_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:34 2005
(242 letters)
>mm_chr2_56025370_56026011
Length = 642
Score = 325 bits (168), Expect = 2e-93
Identities = 221/254 (87%), Gaps = 28/254 (11%)
Strand = Plus / Minus
Query: 1 gaaaccctatctcananaaaaaaaaaaaaaaaaaccaaaaaacaaaacaaaaaaaaaaaa 60
||||||||||||| |||||||||||||||| |||||| ||||| |||
Sbjct: 547 gaaaccctatctc-----aaaaaaaaaaaaaaaa--aaaaaa-aaaac--------caaa 504
Query: 61 acaaaacccaaaaaccaaaatccaaaaaaaaaaaaaaaaaaaaaaaa------------a 108
||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 503 acaaaacccaaaagccaaaatccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagttga 444
Query: 109 agagttgaacattgaacatgagtaaaggcaaccacaaagacctgtagtagggattcaaga 168
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 443 agagttgaacattgaacatgagtagaggcaaccacaaatacctgtagtagggattcaaga 384
Query: 169 ttgaaaaatcatctattaagggagtttcaatgataaacatcatggtgaaaggtcaagcac 228
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgagaaatcatctattaagggagtttcaatgataaacatcatggtgaaaggtcaagcac 324
Query: 229 attcctctccatag 242
||||||||||||||
Sbjct: 323 attcctctccatag 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no435_l11.g1 MSMg01no435_l11.g1 CHROMAT_FILE:
MSMg01no435_l11.g1 PHD_FILE: MSMg01no435_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:34 2005
(370 letters)
>mm_chr2_55914169_55914939
Length = 771
Score = 576 bits (298), Expect = e-169
Identities = 356/382 (93%), Gaps = 17/382 (4%)
Strand = Plus / Plus
Query: 1 ttttgctcttttatttttt---------gggggaatatttttctgatatgcttagggtag 51
||||||||||||||||||| || ||| ||||||||||||||||||| |||
Sbjct: 195 ttttgctcttttatttttttttttttttgg---aatttttttctgatatgcttaggatag 251
Query: 52 aggagagcatgtgcacgtaataaggacaaaaaa-tgagcaaataaattgctgtttgattt 110
|||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 252 aggaaagcatgtgcacttaataaggacaaaaaaatgagcaaataaattgctgtttgattt 311
Query: 111 ggtgagagggaaatttatgtaaattacattttatttttagtatcttatgctatgttaata 170
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 312 ggtgagagggaaatttatgtaaattacattttatttttaatatcttatgctatgttaata 371
Query: 171 aacaaaaccacactttctgattttaaattcagggaaatatt-tgactttta-tcatttag 228
||||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||
Sbjct: 372 aacaaaaccacactttctgattttaaattcagggaaatattat-acttt-agtcatttag 429
Query: 229 aatttaagatatctgtatggcccacaactcagcctgaggcagagcctgtactccagatcc 288
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aattcaagatatctggatggcccacaactcagcctgaggcagagcctgtactccagatcc 489
Query: 289 ctttccacaacaagagatatattatctcccaggacgaccatcaaaagcaacctcacagga 348
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 490 ctttccacaacaagagatatattaactcccaggacgaacatcaaaagcaacctcacagga 549
Query: 349 tcacaggagggacaggatccag 370
||||||||||||||||||||||
Sbjct: 550 tcacaggagggacaggatccag 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 771
Length adjustment: 9
Effective length of query: 361
Effective length of database: 762
Effective search space: 275082
Effective search space used: 275082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
