BAC Information

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BAC

Clone NameMSMg01-435L18
Chromosome2 (Build37)
Map Location 73,373,467 - 73,373,805
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1
Downstream geneChrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172, Lnp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435L18.T7 (MSMg01no435_l18.b1)MSMg01-435L18.TJ (MSMg01no435_l18.g1)
ACCAG526970AG526971
length789816
length of high quality
(start - end)
494 (39 - 532)340 (70 - 409)
definitionCHROMAT_FILE: MSMg01no435_l18.b1 PHD_FILE: MSMg01no435_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:35 2005CHROMAT_FILE: MSMg01no435_l18.g1 PHD_FILE: MSMg01no435_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCA
ACACCTCACTCTCATCAATGGACAGATTATGGAAACACAACCCAAACAAA
GACACAATAAAACTAATAGAAGTGATGGACCAAATGGATTTAACAGATAT
CTATAGGACATTTCATCCTAGAGCAAAAGAATATACCTTCTTCTTAGCAC
CTCACAGTACCTTCTCCAAAATTGACCTTATAATCAGTCACAAAACAGGC
CTCAACAGATCTAAGAAGATTTAAGTAATCTCATGTATCCTATCAGATCA
CCATGGACTAAGACTGGTCTTCAATAGCAACAAAAACAACAGAAAGCTCA
CATACACATGAAACCCTACTCAATGATAACTTGGTCAAGGAAGAAATAAA
GAAATTAAAGGCTTTTTAGAATTTAATGAAAGAAGGCACAACATACCCAA
ACTTATGGGACACAATGAAAGCAGTGGTAAGGGGAAAACTTATTGCTCTA
AGTGCCTTCAAAAAGAAACTAGAGAGAGCATACACTATTCGCTTAACATC
TTGGGAATACTCTTGGAATTCTAGCGCTGTTACAAGTATACCCCCGGGGC
CTCCCTGAAGAGTCTGCCCATCCTGGTTGATGAGATTCTAACCTAGTGTA
AAGATTTGCTTCAAACACAATTGGTGGTCCCCTCCGGGGATACATTTTCC
CCGGTTTGTCCCCTACTTATACACCTCTTGTGCTTGGTTTTTTTTTTTTA
TTACCCCTTTTTATTTTCCTCTGTTACCCCCCATCGCCC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTTAAGAGAGCAGTCTTGGGGTGTAGCCA
TTTGGGAGGAGGGAGCTGCAGTTGCTGGCTTTTATACTTCCAAAATTTGC
ACTCAGATGAGAGATGGTTTTGCCACTCCCATGGACCTGAGGCATCCGAG
TCCTTGACACGACCATGCCCATATCAAGCAACACGCGTTCACTCATGATT
TCATCTGTTCTTTATACATCGACTCAAGGCTCCTCAGCTCCCCACAAGAA
AGAGATTCTTTATGTAGTATCTCAGAAATTGGCCAAAACCATTCAACCAT
TCATTACAGGGTCACACACATAAGAGTGAAACCATTTGGAAGTCTCCCTC
CCTCCCTCCCTCCTTCCTTCTCTTTTTTTCCCCCCTTTTCCTCCCCCCTC
TTTTTTTTTCCCCCTCTTTTTCCCCTCCTTTTTTCCTCCTTCTTCCCCCT
TTTACTTATTCCCCCTCTCCTTCTTTCTCCCCTTTTATCCCCTTTCTTTC
CCCCTTCTCCTTTCTTTTTTCCCCACTCTTCTTCTTATTTTTTTCTCCCT
CTCATCTCCCCCCCCTCTTCTTTTTTTTCTTCTCTCTTCTCTTGCCTCTT
TCTCTTTTTTTTTTATCTTTTTCCCTCTATTTCTAACTACTCTTACCTAC
CCCCCATTTTTCTCCCCCCCCTTTTTTCCTCTCCTTCCTTTCTTCTCCCC
ATTTTCTTTCTCTTTATTCTCTCTACCCTTTCATCTACCCCTTTTTATTT
TTCTCTATTCCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_l18.g1 MSMg01no435_l18.g1 CHROMAT_FILE:
MSMg01no435_l18.g1 PHD_FILE: MSMg01no435_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:35 2005
         (340 letters)



>mm_chr2_73373267_73374005
          Length = 739

 Score =  611 bits (316), Expect = e-179
 Identities = 334/340 (98%), Gaps = 1/340 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttaagagagcagtcttggggtgtagccatttgggaggagggagctgcagttgctggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttaagagagcagtcttggggtgtagccatttgggaggagggagctgcagttgctggc 260

                                                                       
Query: 61  ttttatacttccaaaatttgcactcagatgagagatggttttgccactcccatggacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttatacttccaaaatttgcactcagatgagagatggttttgccactcccatggacctg 320

                                                                       
Query: 121 aggcatccgagtccttgacacgaccatgcccatatcaagcaacacgcgttcactcatgat 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcatccgaatccttgacacgaccatgcccatatcaagcaacacgcgttcactcatgat 380

                                                                       
Query: 181 ttcatctgttctttatacatcgactcaaggctcctcagctccccacaagaaagagattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatctgttctttatacatcgactcaaggctcctcagctccccacaagaaagagattct 440

                                                                       
Query: 241 ttatgtagtatctcagaaattggccaaaaccattcaaccattcattacagggtcacacac 300
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaag-agtatctcagaaattggccaaaaccattcaaccattcattacagggtcacacac 499

                                                   
Query: 301 ataagagtgaaaccatttggaagtctccctccctccctcc 340
           ||||||||||||||||||||||||||| ||| ||| ||||
Sbjct: 500 ataagagtgaaaccatttggaagtctctctctctctctcc 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 739
Length adjustment: 9
Effective length of query: 331
Effective length of database: 730
Effective search space:   241630
Effective search space used:   241630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)